Rapid determination of RNA accessible sites by surface plasmon resonance detection of hybridization to DNA arrays (Q38349294)

2 September 2017

Rapid determination of RNA accessible sites by surface plasmon resonance detection of hybridization to DNA arrays (English)

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surface plasmon resonance

2 September 2017

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2

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2 September 2017

Joshua B Mandir

1

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2 September 2017

Margaret F Phillips

3

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2 September 2017

Hatim T Allawi

4

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2 September 2017

Victor I Lyamichev

5

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2 September 2017

Lloyd M Smith

6

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2 September 2017

language of work or name

English

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publication date

1 November 2009

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2 September 2017

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2 September 2017

81

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2 September 2017

21

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2 September 2017

8949-8956

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describes a project that uses

2 September 2017

surface plasmon resonance

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Carbon-on-metal films for surface plasmon resonance detection of DNA arrays

inferred from title

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

In situ oligonucleotide synthesis on carbon materials: stable substrates for microarray fabrication

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Structure analysis of microRNA precursors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Interpreting oligonucleotide microarray data to determine RNA secondary structure: application to the 3' end of Bombyx mori R2 RNA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Facilitating RNA structure prediction with microarrays

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Applications of DNA tiling arrays for whole-genome analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Structural aspects of microRNA biogenesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Mfold web server for nucleic acid folding and hybridization prediction

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Prioritized selection of oligodeoxyribonucleotide probes for efficient hybridization to RNA transcripts

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Mapping of RNA accessible sites by extension of random oligonucleotide libraries with reverse transcriptase.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Mapping of accessible sites for oligonucleotide hybridization on hepatitis delta virus ribozymes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Effects of RNA secondary structure on cellular antisense activity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Prediction of antisense oligonucleotide binding affinity to a structured RNA target

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Direct fluorescence analysis of genetic polymorphisms by hybridization with oligonucleotide arrays on glass supports

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Complementary Oligonucleotide Binding to the Anticodon Loop of fMet-transfer RNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Derivation of the Secondary Structure of 5S RNA from its Binding of Complementary Oligonucleotides

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

On finding all suboptimal foldings of an RNA molecule

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Light-directed, spatially addressable parallel chemical synthesis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Location of accessible bases in Escherichia coli formylmethionine transfer RNA as determined by chemical modification

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Predicting antisense oligonucleotide inhibitory efficacy: a computational approach using histograms and thermodynamic indices

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Fabrication and characterization of DNA arrays prepared on carbon-on-metal substrates

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Implication of RNA structure on antisense oligonucleotide hybridization kinetics

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Surface plasmon resonance imaging measurements of protein interactions with biopolymer microarrays

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Computer-aided search for effective antisense RNA target sequences of the human immunodeficiency virus type 1.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2771317

Length dependence of RNA-RNA annealing

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19874056

12 December 2020

inferred from PubMed ID database lookup

Surface Plasmon Resonance Imaging Measurements of DNA and RNA Hybridization Adsorption onto DNA Microarrays

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19874056

12 December 2020

inferred from PubMed ID database lookup

Determining the influence of structure on hybridization using oligonucleotide arrays

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19874056

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1021/AC9015962

1 reference

2 September 2017

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2 September 2017

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