Interactions of Hairpin Oligo-2′-O-Methylribonucleotides Containing Methylphosphonate Linkages with HIV TAR RNA (Q38355659)

reason for preferred rank

2 September 2017

title

Interactions of Hairpin Oligo-2′-O-Methylribonucleotides Containing Methylphosphonate Linkages with HIV TAR RNA (English)

1 reference

https://api.crossref.org/works/10.1089/108729003764097313

23 December 2023

Interactions of hairpin oligo-2'-O-methylribonucleotides containing methylphosphonate linkages with HIV TAR RNA (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12691533

23 December 2023

main subject

HIV long terminal repeat

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12691533

23 December 2023

1 reference

https://api.crossref.org/works/10.1089/108729003764097313

23 December 2023

1 reference

https://api.crossref.org/works/10.1089/108729003764097313

23 December 2023

author name string

Tomoko Hamma

1

1 reference

2 September 2017

Paul S. Miller

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12691533

23 December 2023

language of work or name

English

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=12691533

23 December 2023

publication date

1 February 2003

1 reference

full work available at URL

2 September 2017

http://www.liebertpub.com/doi/pdf/10.1089/108729003764097313

1 reference

https://api.crossref.org/works/10.1089/108729003764097313

23 December 2023

1 reference

2 September 2017

volume

13

1 reference

2 September 2017

issue

1

1 reference

2 September 2017

page(s)

19-30

1 reference

Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops

2 September 2017

cites work

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Oligonucleotide analogue interference with the HIV-1 Tat protein-TAR RNA interaction

23 December 2023

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Inhibition of HIV-1 Tat-dependent trans activation by steric block chimeric 2'-O-methyl/LNA oligoribonucleotides.

23 December 2023

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Modified (PNA, 2'-O-methyl and phosphoramidate) anti-TAR antisense oligonucleotides as strong and specific inhibitors of in vitro HIV-1 reverse transcription

23 December 2023

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Oligodeoxyribonucleoside methylphosphonates. NMR and UV spectroscopic studies of Rp-Rp and Sp-Sp methylphosphonate (Me) modified duplexes of (d[GGAATTCC])2.

23 December 2023

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Molecular structure of deoxyadenylyl-3'-methylphosphonate-5'-thymidine dihydrate, (d-ApT x 2H2O), a dinucleoside monophosphate with neutral phosphodiester backbone. An X-ray crystal study

23 December 2023

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Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome

23 December 2023

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2'-O-methyl-RNA hairpins generate loop-loop complexes and selectively inhibit HIV-1 Tat-mediated transcription

23 December 2023

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Implications of RNA structure on the annealing of a potent antisense RNA directed against the human immunodeficiency virus type 1.

23 December 2023

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Pseudo--half-knot formation with RNA

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Antisense RNA

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HIV-1 regulatory/accessory genes: keys to unraveling viral and host cell biology

23 December 2023

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A two unit antisense RNA cassette test system for silencing of target genes

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Binding of complementary oligoribonucleotides to yeast initiator transfer RNA

23 December 2023

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Determinants of RNA hairpin loop-loop complex stability.

23 December 2023

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Syntheses of alternating oligo-2'-O-methylribonucleoside methylphosphonates and their interactions with HIV TAR RNA.

23 December 2023

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A new class of HIV-1 Tat antagonist acting through Tat-TAR inhibition

23 December 2023

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Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 1. Kinetic description of the reaction of an RNA substrate complementary to the active site

23 December 2023

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Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. 2. Kinetic description of the reaction of an RNA substrate that forms a mismatch at the active site

23 December 2023

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Controlling human immunodeficiency virus type 1 gene expression by unnatural peptides

23 December 2023

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A 1.3-A resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation

23 December 2023

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Control of RNA initiation and elongation at the HIV-1 promoter

23 December 2023

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Interactions of oligonucleotide analogs containing methylphosphonate internucleotide linkages and 2'-O-methylribonucleosides

23 December 2023

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A retroviral RNA kissing complex containing only two G⋅C base pairs

23 December 2023

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Tetrahydropyrimidine derivatives inhibit binding of a Tat-like, arginine-containing peptide, to HIV TAR RNA in vitro

23 December 2023

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HIV-1 genome dimerization: formation kinetics and thermal stability of dimeric HIV-1Lai RNAs are not improved by the 1-232 and 296-790 regions flanking the kissing-loop domain

23 December 2023

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Octa(thymidine methanephosphonates) of partially defined stereochemistry: synthesis and effect of chirality at phosphorus on binding to pentadecadeoxyriboadenylic acid

23 December 2023

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Physico-chemical and biological properties of antisense phosphodiester oligonucleotides with various secondary structures

23 December 2023

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Bent helix formation between RNA hairpins with complementary loops

23 December 2023

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Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

23 December 2023

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Inhibitors of protein-RNA complexation that target the RNA: specific recognition of human immunodeficiency virus type 1 TAR RNA by small organic molecules

23 December 2023

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Oligonucleotide inhibition of the interaction of HIV-1 Tat protein with the trans-activation responsive region (TAR) of HIV RNA.

23 December 2023

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Triplex formation by oligodeoxyribonucleotides involving the formation of X.U.A triads

23 December 2023

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A kissing complex together with a stable dimer is involved in the HIV-1Lai RNA dimerization process in vitro

23 December 2023

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GAAA tetraloop and conserved bulge stabilize tertiary structure of a group I intron domain

23 December 2023

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Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex

23 December 2023

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Role of RNA structure in arginine recognition of TAR RNA.

23 December 2023

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Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

23 December 2023

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Synthesis and thermodynamics of oligonucleotides containing chirally pure R(P) methylphosphonate linkages

23 December 2023

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Best minimally modified antisense oligonucleotides according to cell nuclease activity

23 December 2023

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Preparation of stereoregulated antisense oligodeoxyribonucleoside phosphorothioate and interaction with its complementary DNA and RNA

23 December 2023

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Tetraloops and RNA folding

23 December 2023

44

1 reference

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Structure of an unusually stable RNA hairpin

23 December 2023

45

1 reference

https://api.crossref.org/works/10.1089/108729003764097313

Inhibition of HIV-LTR gene expression by oligonucleotides targeted to the TAR element

23 December 2023

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1 reference

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Pharmacokinetics of an anti—human immunodeficiency virus antisense oligodeoxynucleotide phosphorothioate (GEM 91) in HIV-infected subjects*

23 December 2023

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23 December 2023

Identifiers

1 reference

2 September 2017

1 reference