Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis (Q38357042)

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English	Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis	scientific article

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scholarly article

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Europe PubMed Central

2 September 2017

Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis (English)

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Europe PubMed Central

2 September 2017

Bacillus subtilis

object named as

Bacillus subtilis

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based on heuristic

inferred from title

5

object named as

Richard Losick

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Europe PubMed Central

2 September 2017

object named as

Virginie Molle

1

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author name string

Yoshiko Nakaura

2

1 reference

Europe PubMed Central

2 September 2017

Robert P Shivers

3

1 reference

Europe PubMed Central

2 September 2017

Hirotake Yamaguchi

4

1 reference

Europe PubMed Central

2 September 2017

Yasutaro Fujita

6

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Europe PubMed Central

2 September 2017

Abraham L Sonenshein

7

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Europe PubMed Central

2 September 2017

language of work or name

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publication date

1 March 2003

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Europe PubMed Central

2 September 2017

Journal of Bacteriology

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Europe PubMed Central

2 September 2017

185

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Europe PubMed Central

2 September 2017

6

1 reference

Europe PubMed Central

2 September 2017

1911-1922

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Europe PubMed Central

2 September 2017

describes a project that uses

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Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC150151/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

Genome-wide analysis of the stationary-phase sigma factor (sigma-H) regulon of Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Direct and indirect roles of CcpA in regulation of Bacillus subtilis Krebs cycle genes

1 reference

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6 September 2017

RelA protein is involved in induction of genetic competence in certain Bacillus subtilis strains by moderating the level of intracellular GTP.

1 reference

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6 September 2017

Genes directly controlled by CtrA, a master regulator of the Caulobacter cell cycle.

1 reference

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6 September 2017

Biochemical characterization of aspartyl phosphate phosphatase interaction with a phosphorylated response regulator and its inhibition by a pentapeptide.

1 reference

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6 September 2017

Correlation between Bacillus subtilis scoC phenotype and gene expression determined using microarrays for transcriptome analysis

1 reference

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6 September 2017

Involvement of two distinct catabolite-responsive elements in catabolite repression of the Bacillus subtilis myo-inositol (iol) operon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

DNA microarray analysis of Bacillus subtilis DegU, ComA and PhoP regulons: an approach to comprehensive analysis of B.subtilis two-component regulatory systems.

1 reference

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6 September 2017

Pleiotropic transcriptional repressor CodY senses the intracellular pool of branched-chain amino acids in Lactococcus lactis

1 reference

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6 September 2017

Transcriptional pattern of genes coding for the proteolytic system of Lactococcus lactis and evidence for coordinated regulation of key enzymes by peptide supply

1 reference

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6 September 2017

Bacillus subtilis CodY represses early-stationary-phase genes by sensing GTP levels

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

1 reference

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6 September 2017

Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Genome-wide location and function of DNA binding proteins

1 reference

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6 September 2017

Characterization of LrpC DNA-binding properties and regulation of Bacillus subtilis lrpC gene expression

1 reference

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6 September 2017

The transcriptional profile of early to middle sporulation in Bacillus subtilis.

1 reference

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6 September 2017

Environmental regulation of Bacillus subtilis sigma(D)-dependent gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Differential processing of propeptide inhibitors of Rap phosphatases in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Regulation of nitrogen metabolism in Bacillus subtilis: vive la différence!

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Role of bkdR, a transcriptional activator of the sigL-dependent isoleucine and valine degradation pathway in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Expression of the Bacillus subtilis ureABC operon is controlled by multiple regulatory factors including CodY, GlnR, TnrA, and Spo0H

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

CodY is required for nutritional repression of Bacillus subtilis genetic competence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Role of CodY in regulation of the Bacillus subtilis hut operon.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Cell-cell communication regulates the effects of protein aspartate phosphatases on the phosphorelay controlling development in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Multisensory activation of the phosphorelay initiating sporulation in Bacillus subtilis: identification and sequence of the protein kinase of the alternate pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

A gene required for nutritional repression of the Bacillus subtilis dipeptide permease operon

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Expression of the rocDEF operon involved in arginine catabolism in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Response of Guanosine 5′-Triphosphate Concentration to Nutritional Changes and Its Significance for Bacillus subtilis Sporulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Catabolic repression of bacterial sporulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Regulation of histidine and proline degradation enzymes by amino acid availability in Bacillus subtilis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

A target for carbon source-dependent negative regulation of the citB promoter of Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Transcription initiation region of the srfA operon, which is controlled by the comP-comA signal transduction system in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Role of the Bacillus subtilis gsiA gene in regulation of early sporulation gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Comprehensive DNA microarray analysis of Bacillus subtilis two-component regulatory systems.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

An autoregulatory circuit affecting peptide signaling in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

6 September 2017

Complex regulation of the Bacillus subtilis aconitase gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

14 September 2017

Insufficient expression of the ilv-leu operon encoding enzymes of branched-chain amino acid biosynthesis limits growth of a Bacillus subtilis ccpA mutant

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

14 September 2017

Transcriptome and proteome analysis of Bacillus subtilis gene expression modulated by amino acid availability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

14 September 2017

Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

14 September 2017

Partial Purine Deprivation Causes Sporulation of Bacillus subtilis in the Presence of Excess Ammonia, Glucose and Phosphate

1 reference

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14 September 2017

The decrease of guanine nucleotides initiates sporulation of Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

14 September 2017

An lrp-like gene of Bacillus subtilis involved in branched-chain amino acid transport

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

14 September 2017

Structure and organization of plasmid genes required to produce the translation inhibitor microcin C7.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

14 September 2017

Activation of spo0A transcription by sigma H is necessary for sporulation but not for competence in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

14 September 2017

The regulation of competence transcription factor synthesis constitutes a critical control point in the regulation of competence in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

14 September 2017

Differential regulation of spo0A transcription in Bacillus subtilis: glucose represses promoter switching at the initiation of sporulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

14 September 2017

Regulation of the phosphorelay and the initiation of sporulation in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

27 September 2017

Induction of sporulation in Bacillus subtilis by decoyinine or hadacidin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

27 September 2017

The dppA gene of Bacillus subtilis encodes a new D-aminopeptidase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

23 June 2018

A vector for systematic gene inactivation in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

23 June 2018

Expression of the Bacillus subtilis gabP gene is regulated independently in response to nitrogen and amino acid availability.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

23 June 2018

The transition state regulator Hpr of Bacillus subtilis is a DNA-binding protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

23 June 2018

Initiation of sporulation in B. subtilis is controlled by a multicomponent phosphorelay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

23 June 2018

A Bacillus subtilis dipeptide transport system expressed early during sporulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

23 June 2018

Alterations in the flow of one-carbon units affect KinB-dependent sporulation in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

31 August 2018

Evolution of enzymatic activities in the enolase superfamily: functional assignment of unknown proteins in Bacillus subtilis and Escherichia coli as L-Ala-D/L-Glu epimerases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

31 August 2018

Interaction of CodY, a novel Bacillus subtilis DNA-binding protein, with the dpp promoter region.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=150151

31 August 2018

Control of development by altered localization of a transcription factor in B. subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/12618455

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

CcpC, a novel regulator of the LysR family required for glucose repression of the citB gene in Bacillus subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/12618455

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

cis-acting regulatory sequences for antitermination in the transcript of the Bacillus subtilis hut operon and histidine-dependent binding of HutP to the transcript containing the regulatory sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/12618455

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Systematic study of gene expression and transcription organization in the gntZ-ywaA region of the Bacillus subtilis genome

1 reference

https://pubmed.ncbi.nlm.nih.gov/12618455

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and characterization of a bacterial chromosome partitioning site

1 reference

https://pubmed.ncbi.nlm.nih.gov/12618455

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JB.185.6.1911-1922.2003

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Europe PubMed Central

2 September 2017

1 reference

Europe PubMed Central

2 September 2017

1 reference

Europe PubMed Central

2 September 2017

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