Annotation of SBML models through rule-based semantic integration (Q38371927)

2 September 2017

Annotation of SBML models through rule-based semantic integration (English)

1 reference

2 September 2017

2

1 reference

2 September 2017

Allyson L Lister

1

0 references

Anil Wipat

object named as

Anil Wipat

series ordinal

4

0 references

author name string

Matthew Pocock

series ordinal

3

1 reference

2 September 2017

22 June 2010

1 reference

Journal of Biomedical Semantics

2 September 2017

1 reference

2 September 2017

1 Suppl 1

1 reference

2 September 2017

S3

1 reference

https://scigraph.springernature.com/pub.10.1186/2041-1480-1-s1-s3

2 September 2017

0 references

cites work

Annotation and merging of SBML models with semanticSBML

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

Saint: a lightweight integration environment for model annotation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

libAnnotationSBML: a library for exploiting SBML annotations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

Complexity and modularity of intracellular networks: a systematic approach for modelling and simulation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

A Semantic Web management model for integrative biomedical informatics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

Mapping the gene ontology into the unified medical language system

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

MIRIAM Resources: tools to generate and resolve robust cross-references in Systems Biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

Automated manipulation of systems biology models using libSBML within Taverna workflows

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

The universal protein resource (UniProt)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

Addressing the problems with life-science databases for traditional uses and systems biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

An agent- and ontology-based system for integrating public gene, protein, and disease databases.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

BioGRID: a general repository for interaction datasets

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

Minimum information requested in the annotation of biochemical models (MIRIAM)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

The HUPO PSI's molecular interaction format--a community standard for the representation of protein interaction data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

Heterogeneous database integration in biomedicine

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

TAMBIS: transparent access to multiple bioinformatics information sources

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

Modelling the checkpoint response to telomere uncapping in budding yeast.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

Integrating BioPAX pathway knowledge with SBML models.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

The CellML Model Repository

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2903722

10.1186/2041-1480-1-S1-S3

31 August 2018

Identifiers

DOI

1 reference

PMCID

2903722

Dimensions Publication ID

2 September 2017

0 references

1 reference

2 September 2017

1 reference

PMCID

2903722