Visual annotation display (VLAD): a tool for finding functional themes in lists of genes (Q38462184)

3 September 2017

Visual annotation display (VLAD): a tool for finding functional themes in lists of genes (English)

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3 September 2017

2

Carol J Bult

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3 September 2017

Joel E Richardson

1

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3 September 2017

6 June 2015

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3 September 2017

7

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based on heuristic

inferred from page(s)

published in

Mammalian Genome

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3 September 2017

26

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3 September 2017

9-10

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3 September 2017

567-573

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Creative Commons Attribution 4.0 International

3 September 2017

start time

6 June 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Gene Ontology Consortium: going forward

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

The Mammalian Phenotype Ontology as a unifying standard for experimental and high-throughput phenotyping data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

Congenital diaphragmatic hernia candidate genes derived from embryonic transcriptomes.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

GOing Bayesian: model-based gene set analysis of genome-scale data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

How does multiple testing correction work?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

MouseCyc: a curated biochemical pathways database for the laboratory mouse

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

GAGE: generally applicable gene set enrichment for pathway analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

AmiGO: online access to ontology and annotation data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

FUNC: a package for detecting significant associations between gene sets and ontological annotations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

STEM: a tool for the analysis of short time series gene expression data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

PAGE: parametric analysis of gene set enrichment

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

GoMiner: a resource for biological interpretation of genomic and proteomic data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

Gene ontology: tool for the unification of biology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

Annotation enrichment analysis: an alternative method for evaluating the functional properties of gene sets

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4602057

A direct approach to false discovery rates

23 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007%2FS00335-015-9570-2

10.1007/S00335-015-9570-2

21 January 2018

Identifiers

DOI

1 reference

3 September 2017

1 reference

PMC publication ID

4602057

3 September 2017

PubMed publication ID

26047590

1 reference

PMC publication ID

4602057