Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling (Q38468891)

3 September 2017

Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling (English)

1 reference

3 September 2017

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1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25520726%20AND%20SRC:MED&resulttype=core&format=json

Sithichoke Tangphatsornruang

11 June 2020

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25520726%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Anchalee Sirikhachornkit

2

object named as

Anchalee Sirikhachornkit

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25520726%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

author name string

Rachaneeporn Pimjan

3

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11 June 2020

Chutima Sonthirod

4

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11 June 2020

Duangjai Sangsrakru

5

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11 June 2020

Thippawan Yoocha

6

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11 June 2020

Peerasak Srinives

8

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11 June 2020

publication date

2 December 2014

1 reference

Frontiers in Plant Science

3 September 2017

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11 June 2020

volume

5

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11 June 2020

page(s)

658

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25520726%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

11 June 2020

edgeR

object named as

edgeR

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

HTSeq--a Python framework to work with high-throughput sequencing data

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A trihelix DNA binding protein counterbalances hypoxia-responsive transcriptional activation in Arabidopsis

6 September 2017

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Nitric oxide sensing in plants is mediated by proteolytic control of group VII ERF transcription factors.

6 September 2017

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Translational dynamics revealed by genome-wide profiling of ribosome footprints in Arabidopsis

6 September 2017

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Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

6 September 2017

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How unique is the low oxygen response? An analysis of the anaerobic response during germination and comparison with abiotic stress in rice and Arabidopsis

6 September 2017

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Making sense of low oxygen sensing

6 September 2017

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MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

6 September 2017

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The submergence tolerance regulator SUB1A mediates crosstalk between submergence and drought tolerance in rice

6 September 2017

1 reference

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Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L

6 September 2017

1 reference

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edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

6 September 2017

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Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis.

6 September 2017

1 reference

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The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water

6 September 2017

1 reference

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Flooding stress: acclimations and genetic diversity

6 September 2017

1 reference

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Annotating genes of known and unknown function by large-scale coexpression analysis

6 September 2017

1 reference

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PageMan: an interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments

6 September 2017

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AgBase: a functional genomics resource for agriculture

6 September 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

A single hemoglobin gene in Myrica gale retains both symbiotic and non-symbiotic specificity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

6 September 2017

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Submergence-Induced Ethylene Synthesis, Entrapment, and Growth in Two Plant Species with Contrasting Flooding Resistances

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Localization of sucrose synthase in wheat roots: increased in situ activity of sucrose synthase correlates with cell wall thickening by cellulose deposition under hypoxia

6 September 2017

1 reference

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An efficient in planta transformation of Jatropha curcas (L.) and multiplication of transformed plants through in vivo grafting.

23 June 2018

1 reference

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Nitrogen metabolism and translocation in soybean plants subjected to root oxygen deficiency.

31 August 2018

1 reference

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Inhibition of aconitase by nitric oxide leads to induction of the alternative oxidase and to a shift of metabolism towards biosynthesis of amino acids

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization.

31 August 2018

1 reference

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Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia

31 August 2018

1 reference

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Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Arabidopsis RAP2.2: an ethylene response transcription factor that is important for hypoxia survival.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Cross-kingdom comparison of transcriptomic adjustments to low-oxygen stress highlights conserved and plant-specific responses

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Defining core metabolic and transcriptomic responses to oxygen availability in rice embryos and young seedlings.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Molecular diversity and gene expression of cotton ERF transcription factors reveal that group IXa members are responsive to jasmonate, ethylene and Xanthomonas.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Differential response of gray poplar leaves and roots underpins stress adaptation during hypoxia

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Heat acclimation and cross-tolerance against anoxia in Arabidopsis

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

MdERFs, two ethylene-response factors involved in apple fruit ripening

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

A genome-wide analysis of the effects of sucrose on gene expression in Arabidopsis seedlings under anoxia

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Class-1 hemoglobins, nitrate and NO levels in anoxic maize cell-suspension cultures.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Expression of a stress-induced hemoglobin affects NO levels produced by alfalfa root cultures under hypoxic stress.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

A bypass of sucrose synthase leads to low internal oxygen and impaired metabolic performance in growing potato tubers

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Regulation of nitric oxide (NO) production by plant nitrate reductase in vivo and in vitro

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

Sucrose synthase activity does not restrict glycolysis in roots of transgenic potato plants under hypoxic conditions

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

1-aminocyclopropane-1-carboxylate oxidase activity limits ethylene biosynthesis in Rumex palustris during submergence

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4251292

RAP2.6L overexpression delays waterlogging induced premature senescence by increasing stomatal closure more than antioxidant enzyme activity

31 August 2018

1 reference

12 December 2020

Rapid repression of maize invertases by low oxygen. Invertase/sucrose synthase balance, sugar signaling potential, and seedling survival

1 reference

12 December 2020

Nitrate reductase regulation in tomato roots by exogenous nitrate: a possible role in tolerance to long-term root anoxia

1 reference

12 December 2020

Global gene expression responses to waterlogging in roots and leaves of cotton (Gossypium hirsutum L.).

1 reference

12 December 2020

Effect of Anoxia on Carbohydrate Metabolism in Rice Seedlings

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12 December 2020

Effect of oxygen deficiency on nitrogen assimilation and amino acid metabolism of soybean root segments

1 reference

12 December 2020

A plasma membrane-bound enzyme of tobacco roots catalyses the formation of nitric oxide from nitrite

1 reference

12 December 2020

Analysis of the sucrose synthase gene family in Arabidopsis

1 reference

12 December 2020

OsMTN encodes a 5'-methylthioadenosine nucleosidase that is up-regulated during submergence-induced ethylene synthesis in rice (Oryza sativa L.).

1 reference

12 December 2020

Metabolic activity decreases as an adaptive response to low internal oxygen in growing potato tubers

1 reference

12 December 2020

Reactive oxygen species-driven transcription in Arabidopsis under oxygen deprivation

1 reference

12 December 2020

Arabidopsis nonsymbiotic hemoglobin AHb1 modulates nitric oxide bioactivity

1 reference

12 December 2020

Identifiers

DOI

10.3389/FPLS.2014.00658

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25520726%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25520726%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

PubMed publication ID

25520726

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25520726%20AND%20SRC:MED&resulttype=core&format=json