Structural domains and matrix attachment regions along colinear chromosomal segments of maize and sorghum. (Q38500156)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10662861%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

title

Structural domains and matrix attachment regions along colinear chromosomal segments of maize and sorghum (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10662861%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

author name string

Z V Avramova

series ordinal

3

1 reference

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3 November 2019

language of work or name

1 reference

1 February 2000

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3 November 2019

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3 November 2019

volume

12

1 reference

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3 November 2019

issue

2

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3 November 2019

page(s)

249-264

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The MAR-Mediated Reduction in Position Effect Can Be Uncoupled from Copy Number-Dependent Expression in Transgenic Plants.

3 November 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Nuclear scaffolds and scaffold-attachment regions in higher plants

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Bigfoot. a new family of MITE elements characterized from the Medicago genus

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Colinearity and its exceptions in orthologous adh regions of maize and sorghum

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Nuclear compartments and gene regulation.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Are scs and scs' 'neutral' chromatin domain boundaries of the locus?

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Position effects and epigenetic silencing of plant transgenes

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Higher order chromatin structures in maize and Arabidopsis

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Trans-sensing effects: the ups and downs of being together.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Structure and Function in the Nucleus

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Sequence organization and conservation in sh2/a1-homologous regions of sorghum and rice.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Matrix attachment regions and structural colinearity in the genomes of two grass species.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Analysis of the chromatin domain organisation around the plastocyanin gene reveals an MAR-specific sequence element in Arabidopsis thaliana

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Molecular and cytogenetic analyses of stably and unstably expressed transgene loci in tobacco

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

The role of insulator elements in defining domains of gene expression.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Gene identification in a complex chromosomal continuum by local genomic cross-referencing.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Sequence composition and organization in the Sh2/A1-homologous region of rice

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

The heat shock cognate 80 gene of tomato is flanked by matrix attachment regions

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Nested retrotransposons in the intergenic regions of the maize genome

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Scaffold/matrix-attached regions: topological switches with multiple regulatory functions

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

LTR-retrotransposons and MITEs: important players in the evolution of plant genomes

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

A role for nuclear NF-kappaB in B-cell-specific demethylation of the Igkappa locus

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Isolation of matrices from maize leaf nuclei: identification of a matrix-binding site adjacent to the Adh1 gene

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Scaffold attachment regions increase reporter gene expression in stably transformed plant cells.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

DNA class organization on maize Adh1 yeast artificial chromosomes

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Multitude of inverted repeats characterizes a class of anchorage sites of chromatin loops to the nuclear matrix

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Inactivation of gene expression in plants as a consequence of specific sequence duplication

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Characterisation of two intronic nuclear-matrix-attachment regions in the human DNA topoisomerase I gene

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Stowaway: a new family of inverted repeat elements associated with the genes of both monocotyledonous and dicotyledonous plants

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

The relationship between genetic and physical distances in the cloned a1-sh2 interval of the Zea mays L. genome.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Structure of the Drosophila HeT-A transposon: a retrotransposon-like element forming telomeres

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Matrix attachment regions and transcribed sequences within a long chromosomal continuum containing maize Adh1.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Interaction of DNA with nuclear scaffolds in vitro.

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Chromosomal loop anchorage sites appear to be evolutionarily conserved

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Chromosomal loop anchorage of the kappa immunoglobulin gene occurs next to the enhancer in a region containing topoisomerase II sites

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Hierarchical binding of DNA fragments derived from scaffold-attached regions: correlation of properties in vitro and function in vivo

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Matrix attachment sites in the murine alpha-globin gene

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Construction and characterisation of a yeast artificial chromosome library containing three haploid maize genome equivalents

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Characterization of a plant scaffold attachment region in a DNA fragment that normalizes transgene expression in tobacco

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Tourist: a large family of small inverted repeat elements frequently associated with maize genes

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Telomerase and retrotransposons: which came first?

16 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=139762

Elements regulating somatic hypermutation of an immunoglobulin κ gene: Critical role for the intron enhancer/matrix attachment region

16 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10662861

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The transformation booster sequence from Petunia hybrida is a retrotransposon derivative that binds to the nuclear scaffold

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10662861

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Osmium tetroxide footprinting of a scaffold attachment region in the maize Adh1 promoter

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/10662861

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1105/TPC.12.2.249

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10662861%20AND%20SRC:MED&resulttype=core&format=json

3 November 2019

PMC publication ID

139762

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10662861%20AND%20SRC:MED&resulttype=core&format=json