The fundamental ribosomal RNA transcription initiation factor-IB (TIF-IB, SL1, factor D) binds to the rRNA core promoter primarily by minor groove contacts (Q38555339)

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English	The fundamental ribosomal RNA transcription initiation factor-IB (TIF-IB, SL1, factor D) binds to the rRNA core promoter primarily by minor groove contacts	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

4 September 2017

The fundamental ribosomal RNA transcription initiation factor-IB (TIF-IB, SL1, factor D) binds to the rRNA core promoter primarily by minor groove contacts (English)

1 reference

Europe PubMed Central

PubMed publication ID

4 September 2017

author name string

Geiss GK

1

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Europe PubMed Central

PubMed publication ID

4 September 2017

Radebaugh CA

2

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Europe PubMed Central

PubMed publication ID

4 September 2017

Paule MR

3

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Europe PubMed Central

PubMed publication ID

4 September 2017

language of work or name

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publication date

1 November 1997

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Europe PubMed Central

PubMed publication ID

4 September 2017

Journal of Biological Chemistry

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Europe PubMed Central

PubMed publication ID

4 September 2017

272

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Europe PubMed Central

PubMed publication ID

4 September 2017

46

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Europe PubMed Central

PubMed publication ID

4 September 2017

29243-29254

1 reference

Europe PubMed Central

PubMed publication ID

4 September 2017

The ribosomal RNA promoter of Acanthamoeba castellanii determined by transcription in a cell-free system.

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Molecular mechanisms governing species-specific transcription of ribosomal RNA

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rUBF, an RNA polymerase I transcription factor from rats, produces DNase I footprints identical to those produced by xUBF, its homolog from frogs

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Assembly of alternative multiprotein complexes directs rRNA promoter selectivity

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RRN11 encodes the third subunit of the complex containing Rrn6p and Rrn7p that is essential for the initiation of rDNA transcription by yeast RNA polymerase I.

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The role of TBP in rDNA transcription by RNA polymerase I in Saccharomyces cerevisiae: TBP is required for upstream activation factor-dependent recruitment of core factor

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RRN6 and RRN7 encode subunits of a multiprotein complex essential for the initiation of rDNA transcription by RNA polymerase I in Saccharomyces cerevisiae

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The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1

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A TBP-containing multiprotein complex (TIF-IB) mediates transcription specificity of murine RNA polymerase I

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Site-Directed Photo-Cross-Linking of rRNA Transcription Initiation Complexes

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Reconstitution of transcription factor SL1: exclusive binding of TBP by SL1 or TFIID subunits

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Cloning of murine RNA polymerase I-specific TAF factors: conserved interactions between the subunits of the species-specific transcription initiation factor TIF-IB/SL1

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Fractionation and reconstitution of factors required for accurate transcription of mammalian ribosomal RNA genes: identification of a species-dependent initiation factor

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Structural determinant of the species-specific transcription of the mouse rRNA gene promoter

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Common DNA structural features exhibited by eukaryotic ribosomal gene promoters.

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The RNA polymerase I transcription factor UBF is a sequence-tolerant HMG-box protein that can recognize structured nucleic acids

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Footprinting of ribosomal RNA genes by transcription initiation factor and RNA polymerase I

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Regulation of eukaryotic ribosomal RNA transcription by RNA polymerase modification

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Ribosomal RNA transcription: proteins and DNA sequences involved in preinitiation complex formation

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Effects of single-base substitutions within the Acanthamoeba castellanii rRNA promoter on transcription and on binding of transcription initiation factor and RNA polymerase I

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Specific transcription of an Acanthamoeba castellanii 5S RNA gene in homologous nuclear extracts

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21 January 2018

TATA box-binding protein (TBP) is a constituent of the polymerase I-specific transcription initiation factor TIF-IB (SL1) bound to the rRNA promoter and shows differential sensitivity to TBP-directed reagents in polymerase I, II, and III transcripti

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Cloning and expression of the Acanthamoeba castellanii gene encoding transcription factor TFIID

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Affinity purification of sequence-specific DNA binding proteins

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Purification of a yeast TATA box-binding protein that exhibits human transcription factor IID activity

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A molecular mechanism for human T-cell leukemia virus latency and Tax transactivation

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Uranyl mediated photofootprinting reveals strong E. coli RNA polymerase--DNA backbone contacts in the +10 region of the DeoP1 promoter open complex.

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DNA conformational analysis in solution by uranyl mediated photocleavage

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Transcriptional ‘enhancers’ from SV40 and polyoma virus show a cell type preference

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Events during eucaryotic rRNA transcription initiation and elongation: conversion from the closed to the open promoter complex requires nucleotide substrates

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Hydroxyl radical "footprinting": high-resolution information about DNA-protein contacts and application to lambda repressor and Cro protein

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Using hydroxyl radical to probe DNA structure

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Nonintercalating DNA-binding ligands: specificity of the interaction and their use as tools in biophysical, biochemical and biological investigations of the genetic material

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rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coli

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Investigations into the sequence-selective binding of mithramycin and related ligands to DNA.

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High resolution hydroxyl radical footprinting of the binding of mithramycin and related antibiotics to DNA.

1 reference

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TFIID binds in the minor groove of the TATA box

1 reference

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Interaction of TFIID in the minor groove of the TATA element

1 reference

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Crystal structure of TFIID TATA-box binding protein

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Crystal structure of a yeast TBP/TATA-box complex

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Effects of minor groove binding drugs on the interaction of TATA box binding protein and TFIIA with DNA.

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Distamycin A and tallimustine inhibit TBP binding and basal in vitro transcription.

1 reference

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Transcription factors: structural families and principles of DNA recognition

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Uranyl salts as photochemical agents for cleavage of DNA and probing of protein-DNA contacts

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Hydroxyl radical footprinting: a high-resolution method for mapping protein-DNA contacts

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Mitotic regulation of TFIID: inhibition of activator-dependent transcription and changes in subcellular localization.

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Production of positively supercoiled DNA by netropsin

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DNA structural variations produced by actinomycin and distamycin as revealed by DNAase I footprinting.

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Specific activation of transcription initiation by the sequence-specific DNA-binding agents distamycin A and netropsin.

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DNA structure and perturbation by drug binding

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DNA minor groove binding agents interfere with topoisomerase II mediated lesions induced by epipodophyllotoxin derivative VM-26 and acridine derivative m-AMSA in nuclei from L1210 cells

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Acanthamoeba keratitis: first recorded case from a Palestinian patient with trachoma

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An RNA polymerase I promoter located in the CHO and mouse ribosomal DNA spacers: functional analysis and factor and sequence requirements

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In search of the single factor

1 reference

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Ribosomal RNA transcription in vitro is species specific

1 reference

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21 January 2018

Identifiers

10.1074/JBC.272.46.29243

1 reference

Europe PubMed Central

PubMed publication ID

4 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

4 September 2017

ResearchGate publication ID

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