GRIFFIN: A versatile methodology for optimization of protein-lipid interfaces for membrane protein simulations. (Q38589483)

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13 March 2020

title

GRIFFIN: A versatile methodology for optimization of protein-lipid interfaces for membrane protein simulations (English)

1 reference

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13 March 2020

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2

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13 March 2020

Lucy R. Forrest

series ordinal

3

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13 March 2020

author name string

René Staritzbichler

series ordinal

1

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13 March 2020

José D Faraldo-Gómez

series ordinal

4

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13 March 2020

publication date

1 April 2011

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Journal of Chemical Theory and Computation

13 March 2020

published in

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13 March 2020

volume

7

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13 March 2020

issue

4

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13 March 2020

page(s)

1167-1176

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GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

13 March 2020

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A structural mechanism for MscS gating in lipid bilayers

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Coarse-grained MD simulations of membrane protein-bilayer self-assembly.

6 September 2017

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Rotation of lipids in membranes: molecular dynamics simulation, 31P spin-lattice relaxation, and rigid-body dynamics

6 September 2017

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Automated builder and database of protein/membrane complexes for molecular dynamics simulations

6 September 2017

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Setting up and running molecular dynamics simulations of membrane proteins

6 September 2017

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Scalable molecular dynamics with NAMD

6 September 2017

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Structure of the rotor of the V-Type Na+-ATPase from Enterococcus hirae

6 September 2017

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Setting up and optimization of membrane protein simulations.

6 September 2017

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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

6 September 2017

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Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

6 September 2017

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A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure

6 September 2017

1 reference

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Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer

6 September 2017

1 reference

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Osmolality, temperature, and membrane lipid composition modulate the activity of betaine transporter BetP in Corynebacterium glutamicum

6 September 2017

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Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism.

31 August 2018

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Modulation of glycophorin A transmembrane helix interactions by lipid bilayers: molecular dynamics calculations.

31 August 2018

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Transmembrane helix structure, dynamics, and interactions: multi-nanosecond molecular dynamics simulations

31 August 2018

1 reference

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Structure, energetics, and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a DMPC bilayer

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24707227

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/CT100576M

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24707227%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference

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13 March 2020

1 reference