Opine-based Agrobacterium competitiveness: dual expression control of the agrocinopine catabolism (acc) operon by agrocinopines and phosphate levels (Q38608576)

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scientific article published on 14 March 2008

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English	Opine-based Agrobacterium competitiveness: dual expression control of the agrocinopine catabolism (acc) operon by agrocinopines and phosphate levels	scientific article published on 14 March 2008

Statements

scholarly article

1 reference

Europe PubMed Central

4 September 2017

Opine-based Agrobacterium competitiveness: dual expression control of the agrocinopine catabolism (acc) operon by agrocinopines and phosphate levels (English)

1 reference

Europe PubMed Central

4 September 2017

author name string

H Stanley Kim

1

1 reference

Europe PubMed Central

4 September 2017

Hyojeong Yi

2

1 reference

Europe PubMed Central

4 September 2017

Jaehee Myung

3

1 reference

Europe PubMed Central

4 September 2017

Kevin R Piper

4

1 reference

Europe PubMed Central

4 September 2017

Stephen K Farrand

5

1 reference

Europe PubMed Central

4 September 2017

language of work or name

0 references

publication date

14 March 2008

1 reference

Europe PubMed Central

4 September 2017

Journal of Bacteriology

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Europe PubMed Central

4 September 2017

190

1 reference

Europe PubMed Central

4 September 2017

10

1 reference

Europe PubMed Central

4 September 2017

3700-3711

1 reference

Europe PubMed Central

4 September 2017

Biological systems of the host cell involved in Agrobacterium infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Bases of biocontrol: sequence predicts synthesis and mode of action of agrocin 84, the Trojan horse antibiotic that controls crown gall

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

T-DNA from Agrobacterium Ti plasmid is in the nuclear DNA fraction of crown gall tumor cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Global transcriptional analysis of the phosphate starvation response in Sinorhizobium meliloti strains 1021 and 2011.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Agrobacterium-mediated plant transformation: the biology behind the "gene-jockeying" tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Mutations in the occQ operator that decrease OccR-induced DNA bending do not cause constitutive promoter activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

The genome of the natural genetic engineer Agrobacterium tumefaciens C58

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

The Lac repressor: a second generation of structural and functional studies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Hinge-helix formation and DNA bending in various lac repressor-operator complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

phnE and glpT genes enhance utilization of organophosphates in Escherichia coli K-12.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Characterization of the acc operon from the nopaline-type Ti plasmid pTiC58, which encodes utilization of agrocinopines A and B and susceptibility to agrocin 84

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

The tra region of the nopaline-type Ti plasmid is a chimera with elements related to the transfer systems of RSF1010, RP4, and F

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Conjugation factor of Agrobacterium tumefaciens regulates Ti plasmid transfer by autoinduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Genetic analysis of the agrocinopine catabolic region of Agrobacterium tumefaciens Ti plasmid pTiC58, which encodes genes required for opine and agrocin 84 transport

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by alpha helices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

The locus of sequence-directed and protein-induced DNA bending

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Agrobacterium tumefaciens DNA and PS8 Bacteriophage DNA Not Detected in Crown Gall Tumors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Characterization and mapping of the agrocinopine-agrocin 84 locus on the nopaline Ti plasmid pTiC58.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Bacterial blight of soybean: regulation of a pathogen gene determining host cultivar specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Multipartite genetic control elements: communication by DNA loop

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Transcriptional induction of an Agrobacterium regulatory gene at tandem promoters by plant-released phenolic compounds, phosphate starvation, and acidic growth media

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Involvement of the Escherichia coli phn (psiD) gene cluster in assimilation of phosphorus in the form of phosphonates, phosphite, Pi esters, and Pi

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Opine catabolism and conjugal transfer of the nopaline Ti plasmid pTiC58 are coordinately regulated by a single repressor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

18 Genetic Analysis of Agrobacterium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

The A. tumefaciens transcriptional activator OccR causes a bend at a target promoter, which is partially relaxed by a plant tumor metabolite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Plasmid required for virulence of Agrobacterium tumefaciens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Interactions and DNA transfer between Agrobacterium tumefaciens, the Ti-plasmid and the plant host

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Identification and characterization of a DeoR-specific operator sequence essential for induction of dra-nupC-pdp operon expression in Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

6 September 2017

Two opines control conjugal transfer of an Agrobacterium plasmid by regulating expression of separate copies of the quorum-sensing activator gene traR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

14 September 2017

Diversity among Opine-Utilizing Bacteria: Identification of Coryneform Isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

14 September 2017

Phosphoribosyl diphosphate synthetase-independent NAD de novo synthesis in Escherichia coli: a new phenotype of phosphate regulon mutants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

14 September 2017

Opine-regulated promoters and LysR-type regulators in the nopaline (noc) and octopine (occ) catabolic regions of Ti plasmids of Agrobacterium tumefaciens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

14 September 2017

Promoters responsive to DNA bending: a common theme in prokaryotic gene expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

14 September 2017

Opine transport genes in the octopine (occ) and nopaline (noc) catabolic regions in Ti plasmids of Agrobacterium tumefaciens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

14 September 2017

Purification and characterization of the deoR repressor of Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

25 September 2017

Agrocinopine A, a phosphorylated opine is secreted from crown gall cells.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

25 September 2017

Two operator sites separated by 599 base pairs are required for deoR repression of the deo operon of Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

25 September 2017

Characterization of the Opine-Utilizing Microflora Associated with Samples of Soil and Plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

Co-evolution of the agrocinopine opines and the agrocinopine-mediated control of TraR, the quorum-sensing activator of the Ti plasmid conjugation system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

A shared, non-canonical DNA conformation detected at DNA/protein contact sites and bent DNA in the absence of supercoiling or cognate protein binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

Identification of the Agrobacterium tumefaciens C58 T-DNA genes e and f and their impact on crown gall tumour formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

Nopaline synthase: transcript mapping and DNA sequence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

Regulation of the phosphate regulon of Escherichia coli. Activation of pstS transcription by PhoB protein in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

Tn5 insertions in the agrocin 84 plasmid: the conjugal nature of pAgK84 and the locations of determinants for transfer and agrocin 84 production.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

Improved broad-host-range plasmids for DNA cloning in gram-negative bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

DNA bending by negative regulatory proteins: Gal and Lac repressors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

DNA looping and unlooping by AraC protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

A wide-host-range suicide vector for improving reverse genetics in Gram-negative bacteria: inactivation of the blaA gene of Yersinia enterocolitica

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

Octopine and nopaline synthesis and breakdown genetically controlled by a plasmid of Agrobacterium tumefaciens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

Adenine N6-substituent of agrocin 84 determines its bacteriocin-like specificity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

23 June 2018

Hierarchical gene regulatory systems arising from fortuitous gene associations: controlling quorum sensing by the opine regulon in Agrobacterium.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2395003

31 August 2018

The functional organization of the nopaline A. tumefaciens plasmid pTiC58

1 reference

https://pubmed.ncbi.nlm.nih.gov/18344359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Opine catabolic loci from Agrobacterium plasmids confer chemotaxis to their cognate substrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/18344359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Agrocinopine A, a tumor-inducing plasmid-coded enzyme product, is a phosphodiester of sucrose and L-arabinose

1 reference

https://pubmed.ncbi.nlm.nih.gov/18344359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein-induced bending as a transcriptional switch

1 reference

https://pubmed.ncbi.nlm.nih.gov/18344359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Agrocin 84 is a 6-N-phosphoramidate of an adenine nucleotide analogue

1 reference

https://pubmed.ncbi.nlm.nih.gov/18344359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/18344359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA specificity of Escherichia coli deoP1 operator-DeoR repressor recognition

1 reference

https://pubmed.ncbi.nlm.nih.gov/18344359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new color reaction for the determination of aldopentose in presence of other saccharides

1 reference

https://pubmed.ncbi.nlm.nih.gov/18344359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic isolation and physical characterization of pAgK84, the plasmid responsible for agrocin 84 production

1 reference

https://pubmed.ncbi.nlm.nih.gov/18344359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Substituents at N6 and C-5′ Control Selective Uptake and Toxicity of the Adenine-Nucleotide Bacteriocin, Agrocin 84, in Agrobacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/18344359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic analysis of crown gall: Fine structure map of the T-DNA by site-directed mutagenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/18344359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bending of DNA by gene-regulatory proteins: construction and use of a DNA bending vector

1 reference

https://pubmed.ncbi.nlm.nih.gov/18344359

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/JB.00067-08

1 reference

Europe PubMed Central

4 September 2017

1 reference

Europe PubMed Central

4 September 2017

1 reference

Europe PubMed Central

4 September 2017

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