ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions (Q38624857)

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27 March 2020

title

ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions (English)

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27 March 2020

0 references

1 reference

2

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27 March 2020

Alejandro Panjkovich

4

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27 March 2020

Cy M Jeffries

10

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27 March 2020

Dmitri Svergun

11

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27 March 2020

author name string

D Franke

1

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27 March 2020

P V Konarev

3

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27 March 2020

A Tuukkanen

5

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27 March 2020

H D T Mertens

6

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27 March 2020

A G Kikhney

7

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27 March 2020

N R Hajizadeh

8

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27 March 2020

J M Franklin

9

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27 March 2020

publication date

26 June 2017

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Journal of Applied Crystallography

27 March 2020

published in

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27 March 2020

volume

50

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27 March 2020

issue

Pt 4

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27 March 2020

page(s)

1212-1225

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Resolution of ab initio shapes determined from small-angle scattering

27 March 2020

cites work

1 reference

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US-SOMO HPLC-SAXS module: dealing with capillary fouling and extraction of pure component patterns from poorly resolved SEC-SAXS data.

6 September 2017

1 reference

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The new NCPSS BL19U2 beamline at the SSRF for small-angle X-ray scattering from biological macromolecules in solution.

6 September 2017

1 reference

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Rapid automated superposition of shapes and macromolecular models using spherical harmonics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

SASpy: a PyMOL plugin for manipulation and refinement of hybrid models against small angle X-ray scattering data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

SASfit: a tool for small-angle scattering data analysis using a library of analytical expressions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

DATASW, a tool for HPLC-SAXS data analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

A posteriori determination of the useful data range for small-angle scattering experiments on dilute monodisperse systems.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Ambiguity assessment of small-angle scattering curves from monodisperse systems.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Versatile sample environments and automation for biological solution X-ray scattering experiments at the P12 beamline (PETRA III, DESY)

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Upgrade of MacCHESS facility for X-ray scattering of biological macromolecules in solution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

New developments in the ATSAS program package for small-angle scattering data analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Impact and progress in small and wide angle X-ray scattering (SAXS and WAXS).

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Report of the wwPDB Small-Angle Scattering Task Force: data requirements for biomolecular modeling and the PDB.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Accurate assessment of mass, models and resolution by small-angle scattering

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Implementation and performance of SIBYLS: a dual endstation small-angle X-ray scattering and macromolecular crystallography beamline at the Advanced Light Source

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

A flexible multidomain structure drives the function of the urokinase-type plasminogen activator receptor (uPAR)

6 September 2017

1 reference

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Publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution.

6 September 2017

1 reference

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Resolution measures in molecular electron microscopy

6 September 2017

1 reference

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Three conformational snapshots of the hepatitis C virus NS3 helicase reveal a ratchet translocation mechanism

6 September 2017

1 reference

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Structural characterization of flexible proteins using small-angle X-ray scattering

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Global rigid body modeling of macromolecular complexes against small-angle scattering data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Calculation of standard atomic volumes for RNA and comparison with proteins: RNA is packed more tightly

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Determination of domain structure of proteins from X-ray solution scattering

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

The packing density in proteins: standard radii and volumes.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Crystal structure of RNA helicase from genotype 1b hepatitis C virus. A feasible mechanism of unwinding duplex RNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Protein hydration in solution: experimental observation by x-ray and neutron scattering

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Advanced ensemble modelling of flexible macromolecules using X-ray solution scattering

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Deciphering conformational transitions of proteins by small angle X-ray scattering and normal mode analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Automated pipeline for purification, biophysical and x-ray analysis of biomacromolecular solutions

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Correlation Map, a goodness-of-fit test for one-dimensional X-ray scattering spectra

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

SEC-SANS: size exclusion chromatography combined in situ with small-angle neutron scattering

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

The conundrum of the high-affinity NGF binding site formation unveiled?

23 June 2018

1 reference

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Upgraded ESRF BM29 beamline for SAXS on macromolecules in solution

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Simplified normal mode analysis of conformational transitions in DNA-dependent polymerases: the elastic network model

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Reconstruction of quaternary structure from X-ray scattering by equilibrium mixtures of biological macromolecules.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

NADPH oxidase activator p67(phox) behaves in solution as a multidomain protein with semi-flexible linkers

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Volume changes on protein folding.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

Structural biology: Breaking the protein rules

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5541357

SWEET - WWW-based rapid 3D construction of oligo- and polysaccharides

3 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28808438

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1107/S1600576717007786

1 reference

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27 March 2020

1 reference

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27 March 2020

PubMed publication ID

28808438

1 reference