GenomeScope: Fast reference-free genome profiling from short reads. (Q38860398)

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15 March 2020

title

GenomeScope: fast reference-free genome profiling from short reads (English)

1 reference

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15 March 2020

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2

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15 March 2020

Charles J Underwood

4

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15 March 2020

author name string

Gregory W Vurture

1

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15 March 2020

Maria Nattestad

3

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15 March 2020

Han Fang

5

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15 March 2020

James Gurtowski

6

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15 March 2020

Michael C Schatz

7

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15 March 2020

language of work or name

English

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publication date

1 July 2017

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15 March 2020

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15 March 2020

volume

33

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15 March 2020

issue

14

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15 March 2020

page(s)

2202-2204

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Coming of age: ten years of next-generation sequencing technologies

15 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data.

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

KmerStream: streaming algorithms for k-mer abundance estimation

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

Exploring genome characteristics and sequence quality without a reference

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

Informed and automated k-mer size selection for genome assembly

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

Quake: quality-aware detection and correction of sequencing errors

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

The Sequence Alignment/Map format and SAMtools

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

Genome assembly forensics: finding the elusive mis-assembly

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

Estimating the repeat structure and length of DNA sequences using L-tuples

15 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5870704

10.1093/BIOINFORMATICS/BTX153

15 September 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369201%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/VurtureSNUFGS17

15 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28369201%20AND%20SRC:MED&resulttype=core&format=json

15 March 2020

PubMed publication ID

28369201

1 reference