Single-molecule fluorescence spectroscopy maps the folding landscape of a large protein (Q38963464)

8 September 2017

Single-molecule fluorescence spectroscopy maps the folding landscape of a large protein (English)

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fluorescence spectroscopy

8 September 2017

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Guy Ziv

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Nir Zohar

object named as

Nir Zohar

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author name string

Menahem Pirchi

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8 September 2017

Guy Ziv

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8 September 2017

Inbal Riven

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8 September 2017

Sharona Sedghani Cohen

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8 September 2017

Yoav Barak

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8 September 2017

Gilad Haran

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8 September 2017

language of work or name

English

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publication date

11 October 2011

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8 September 2017

Nature Communications

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8 September 2017

2

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8 September 2017

493

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Taming the complexity of protein folding

8 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Dynamics of heat shock protein 90 C-terminal dimerization is an important part of its conformational cycle

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Single-molecule FRET-derived model of the synaptotagmin 1-SNARE fusion complex

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Constructing the equilibrium ensemble of folding pathways from short off-equilibrium simulations.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Single molecule nanocontainers made porous using a bacterial toxin.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Direct Determination of Kinetic Rates from Single-Molecule Photon Arrival Trajectories Using Hidden Markov Models.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Noncooperative folding of subdomains in adenylate kinase

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Collapse transition in proteins

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

From the first protein structures to our current knowledge of protein folding: delights and scepticisms

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Advances in single-molecule fluorescence methods for molecular biology

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Protein folding and misfolding: mechanism and principles.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Intrinsic motions along an enzymatic reaction trajectory

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Illuminating the mechanistic roles of enzyme conformational dynamics

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Ultrafast dynamics of protein collapse from single-molecule photon statistics.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Analysis of single-molecule FRET trajectories using hidden Markov modeling

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Protein misfolding, functional amyloid, and human disease

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Single-molecule Forster resonance energy transfer study of protein dynamics under denaturing conditions

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Protein folding: the stepwise assembly of foldon units

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Two-state folding observed in individual protein molecules

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Protein folding and misfolding

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Watching proteins fold one molecule at a time

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Dynamics and folding of single two-stranded coiled-coil peptides studied by fluorescent energy transfer confocal microscopy

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Fast kinetics and mechanisms in protein folding

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Observation of strange kinetics in protein folding

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Theory of protein folding: the energy landscape perspective

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Folding of an all-beta protein: independent domain folding in gamma II-crystallin from calf eye lens

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Hidden markov analysis of short single molecule intensity trajectories

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Refolding of urea-denatured adenylate kinase

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Probing transient copper chaperone-Wilson disease protein interactions at the single-molecule level with nanovesicle trapping

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

The folding and evolution of multidomain proteins

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Fast collapse but slow formation of secondary structure elements in the refolding transition of E. coli adenylate kinase

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

The natively helical chain segment 169-188 of Escherichia coli adenylate kinase is formed in the latest phase of the refolding transition

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Rough energy landscapes in protein folding: dimeric E. coli Trp repressor folds through three parallel channels

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Parallel protein-unfolding pathways revealed and mapped

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

The foldon universe: a survey of structural similarity and self-recognition of independently folding units 1 1Edited by F. E. Cohen

2 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3209527

Sequential unfolding of adenylate kinase during denaturation by guanidine hydrochloride

2 December 2018

1 reference

12 December 2020

Symmetric connectivity of secondary structure elements enhances the diversity of folding pathways

1 reference

12 December 2020

Induced-fit movements in adenylate kinases

1 reference

12 December 2020

Determination of intramolecular distance distribution during protein folding on the millisecond timescale

1 reference

12 December 2020

Kinetic stabilisation of a modular protein by domain interactions

1 reference

12 December 2020

Protein Folding and Dynamics from Optical Single Molecule Spectroscopy

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS1504

7 January 2021

inferred from DOI database lookup

A tutorial on hidden Markov models and selected applications in speech recognition

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNCOMMS1504

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NCOMMS1504

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Dimensions Publication ID

8 September 2017

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0 references

1 reference

8 September 2017

PubMed publication ID

21988909

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