Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen). (Q39256490)

10 September 2017

Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen). (English)

1 reference

10 September 2017

1

Andrew Rambaut

1 reference

10 September 2017

4

Oliver G Pybus

1 reference

10 September 2017

Tommy T Lam

2

1 reference

PMCID

4989882

10 September 2017

Luiz Max Carvalho

series ordinal

3

1 reference

10 September 2017

1 January 2016

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10 September 2017

1 reference

10 September 2017

2

1 reference

10 September 2017

1

1 reference

10 September 2017

vew007

1 reference

Measurably evolving pathogens in the genomic era

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Evolutionary analysis of hepatitis C virus gene sequences from 1953

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Bayesian phylogenetics with BEAUti and the BEAST 1.7

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

The evolutionary rate dynamically tracks changes in HIV-1 epidemics: application of a simple method for optimizing the evolutionary rate in phylogenetic trees with longitudinal data

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Bayesian random local clocks, or one rate to rule them all

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Using time-structured data to estimate evolutionary rates of double-stranded DNA viruses

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Recent human-to-poultry host jump, adaptation, and pandemic spread of Staphylococcus aureus

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Evolutionary analysis of the dynamics of viral infectious disease

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

The global circulation of seasonal influenza A (H3N2) viruses

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Phylogenetic evidence against evolutionary stasis and natural abiotic reservoirs of influenza A virus

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

PAML 4: phylogenetic analysis by maximum likelihood

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Relaxed phylogenetics and dating with confidence

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Rise and fall of the Beringian steppe bison

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Inference of viral evolutionary rates from molecular sequences

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Performance of a divergence time estimation method under a probabilistic model of rate evolution

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

A compound poisson process for relaxing the molecular clock

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Evolution of human influenza A viruses over 50 years: rapid, uniform rate of change in NS gene

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Molecular clock of viral evolution, and the neutral theory

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Systematic phylogenetic analysis of influenza A virus reveals many novel mosaic genome segments

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

The effect of genetic structure on molecular dating and tests for temporal signal

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Reconstructing genealogies of serial samples under the assumption of a molecular clock using serial-sample UPGMA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4989882

Measurably evolving populations

21 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FVE%2FVEW007

The Permian Bacterium that Isn't

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FVE%2FVEW007

21 January 2018

Identifiers

DOI

10.1093/VE/VEW007

1 reference

PMCID

4989882

b98882c7-8dbd-3906-a85a-0ab55cde7d86

10 September 2017

Mendeley publication ID

1 reference

https://www.mendeley.com/catalogue/b98882c7-8dbd-3906-a85a-0ab55cde7d86/

title

Exploring the temporal structure ... preview & related info | Mendeley (British English)

11 October 2022

1 reference

10 September 2017

1 reference

PMCID

4989882