Activation of a dormant ClpX recognition motif of bacteriophage Mu repressor by inducing high local flexibility (Q39260728)

10 September 2017

Activation of a dormant ClpX recognition motif of bacteriophage Mu repressor by inducing high local flexibility (English)

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10 September 2017

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Kimberly R Marshall-Batty

series ordinal

1

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10 September 2017

Hiroshi Nakai

series ordinal

2

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10 September 2017

language of work or name

English

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publication date

28 January 2008

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Journal of Biological Chemistry

10 September 2017

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10 September 2017

283

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10 September 2017

14

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10 September 2017

9060-9070

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Distinct peptide signals in the UmuD and UmuD' subunits of UmuD/D' mediate tethering and substrate processing by the ClpXP protease.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Protein unfolding--an important process in vivo?

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Trans-targeting of the phage Mu repressor is promoted by conformational changes that expose its ClpX recognition determinant

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

ClpAP and ClpXP degrade proteins with tags located in the interior of the primary sequence

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Fluorescence resonance energy transfer biosensors that detect Ran conformational changes and a Ran x GDP-importin-beta -RanBP1 complex in vitro and in intact cells

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Overlapping recognition determinants within the ssrA degradation tag allow modulation of proteolysis.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

The tRNA function of SsrA contributes to controlling repression of bacteriophage Mu prophage.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

The RssB response regulator directly targets sigma(S) for degradation by ClpXP

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

The structure of ClpP at 2.3 A resolution suggests a model for ATP-dependent proteolysis

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Structural studies of p21Waf1/Cip1/Sdi1 in the free and Cdk2-bound state: conformational disorder mediates binding diversity

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

C-terminal deletions can suppress temperature-sensitive mutations and change dominance in the phage Mu repressor

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

ClpX protein of Escherichia coli activates bacteriophage Mu transposase in the strand transfer complex for initiation of Mu DNA synthesis

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Bacteriophage Mu repressor as a target for the Escherichia coli ATP-dependent Clp Protease

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

How to measure and predict the molar absorption coefficient of a protein

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Escherichia coli K-12 cell-cell interactions seen by time-lapse video

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Differential activity of a transposable element in Escherichia coli colonies

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Temperature-sensitive mutations in the bacteriophage Mu c repressor locate a 63-amino-acid DNA-binding domain

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Virulence in bacteriophage Mu: a case of trans-dominant proteolysis by the Escherichia coli Clp serine protease

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Binding-dependent disorder-order transition in PKI alpha: a fluorescence anisotropy study

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

ClpX and MuB interact with overlapping regions of Mu transposase: implications for control of the transposition pathway.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

A new component of bacteriophage Mu replicative transposition machinery: the Escherichia coli ClpX protein.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Interaction of distinct domains in Mu transposase with Mu DNA ends and an internal transpositional enhancer.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Effects of local protein stability and the geometric position of the substrate degradation tag on the efficiency of ClpXP denaturation and degradation

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Bivalent tethering of SspB to ClpXP is required for efficient substrate delivery: a protein-design study.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

A Context-dependent ClpX Recognition Determinant Located at the C Terminus of Phage Mu Repressor

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Targeted Delivery of an ssrA-Tagged Substrate by the Adaptor Protein SspB to Its Cognate AAA+ Protein ClpX

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Linkage between ATP consumption and mechanical unfolding during the protein processing reactions of an AAA+ degradation machine.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Proteomic discovery of cellular substrates of the ClpXP protease reveals five classes of ClpX-recognition signals

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Characterization of a specificity factor for an AAA+ ATPase: assembly of SspB dimers with ssrA-tagged proteins and the ClpX hexamer

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Conformational dynamics of a transposition repressor in modulating DNA binding

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

ATP-dependent proteases degrade their substrates by processively unraveling them from the degradation signal

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Dynamics of substrate denaturation and translocation by the ClpXP degradation machine

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Communication of ClpXP protease hypersensitivity to bacteriophage mu repressor isoforms

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2431027

Spectrofluorometric Characterization of β-Lactoglobulin B Covalently Labeled with 2-(4‘-Maleimidylanilino)naphthalene-6-sulfonate

21 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M705508200

Effect of Conformational Flexibility and Solvation on Receptor-Ligand Binding Free Energies

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M705508200

Versatile action of Escherichia coli ClpXP as protease or molecular chaperone for bacteriophage Mu transposition

21 January 2018

1 reference

12 December 2020

DNA-binding characteristics of theEscherichia coliCytR regulator: a relaxed spacing requirement between operator half-sites is provided by a flexible, unstructured interdomain linker

1 reference

12 December 2020

Oligomeric structure of the repressor of the bacteriophage Mu early operon

1 reference

12 December 2020

Enzymatic and structural similarities between the Escherichia coli ATP-dependent proteases, ClpXP and ClpAP

1 reference

12 December 2020

Starvation-induced Mucts62-mediated coding sequence fusion: a role for ClpXP, Lon, RpoS and Crp

1 reference

12 December 2020

Recognition, targeting, and hydrolysis of the lambda O replication protein by the ClpP/ClpX protease

1 reference

12 December 2020

Nanosecond dynamics of tryptophans in different conformational states of apomyoglobin proteins

1 reference

12 December 2020

Modulation of phage Mu repressor DNA binding and degradation by distinct determinants in its C-terminal domain

1 reference

12 December 2020

The N-terminal zinc binding domain of ClpX is a dimerization domain that modulates the chaperone function

1 reference

12 December 2020

Positive and negative regulation of the Mu operator by Mu repressor and Escherichia coli integration host factor

1 reference

12 December 2020

Transpososomes: Stable protein-DNA complexes involved in the in vitro transposition of bacteriophage Mu DNA

1 reference

12 December 2020

Efficient Mu transposition requires interaction of transposase with a DNA sequence at the Mu operator: implications for regulation

1 reference

12 December 2020

Interactions between the repressor and the early operator region of bacteriophage Mu

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M705508200

1 reference

10 September 2017

1 reference

10 September 2017

PubMed publication ID

18230617

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