Intronic splicing enhancers, cognate splicing factors and context-dependent regulation rules (Q39277603)

10 September 2017

Intronic splicing enhancers, cognate splicing factors and context-dependent regulation rules (English)

1 reference

10 September 2017

Yang Wang

1

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Xinshu Xiao

object named as

Xinshu Xiao

series ordinal

3

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Zefeng Wang

object named as

Zefeng Wang

series ordinal

4

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author name string

Meng Ma

series ordinal

2

1 reference

10 September 2017

16 September 2012

1 reference

Nature Structural & Molecular Biology

10 September 2017

1 reference

10 September 2017

19

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10

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10 September 2017

1044-1052

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PMCID

3753194

describes a project that uses

10 September 2017

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3753194/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

exact match

https://scigraph.springernature.com/pub.10.1038/nsmb.2377

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cites work

Integrative genome-wide analysis reveals cooperative regulation of alternative splicing by hnRNP proteins

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Interaction of hnRNPA1/A2 and DAZAP1 with an Alu-derived intronic splicing enhancer regulates ATM aberrant splicing

10 September 2017

1 reference

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G Run-mediated recognition of proteolipid protein and DM20 5' splice sites by U1 small nuclear RNA is regulated by context and proximity to the splice site.

10 September 2017

1 reference

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RBPDB: a database of RNA-binding specificities

10 September 2017

1 reference

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Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Deciphering the splicing code

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Functional selection and systematic analysis of intronic splicing elements identify active sequence motifs and associated splicing factors

10 September 2017

1 reference

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Expansion of the eukaryotic proteome by alternative splicing

10 September 2017

1 reference

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Engineering splicing factors with designed specificities

10 September 2017

1 reference

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Splice site strength-dependent activity and genetic buffering by poly-G runs

10 September 2017

1 reference

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Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing

10 September 2017

1 reference

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Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines

10 September 2017

1 reference

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Alternative isoform regulation in human tissue transcriptomes

10 September 2017

1 reference

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Binding of DAZAP1 and hnRNPA1/A2 to an exonic splicing silencer in a natural BRCA1 exon 18 mutant

10 September 2017

1 reference

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Splicing regulation: from a parts list of regulatory elements to an integrated splicing code

10 September 2017

1 reference

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Positive selection acting on splicing motifs reflects compensatory evolution

10 September 2017

1 reference

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Coevolutionary networks of splicing cis-regulatory elements

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements

10 September 2017

1 reference

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Inference of splicing regulatory activities by sequence neighborhood analysis

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

WT1 interacts with the splicing protein RBM4 and regulates its ability to modulate alternative splicing in vivo

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Alternative splicing: new insights from global analyses

10 September 2017

1 reference

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General and specific functions of exonic splicing silencers in splicing control

10 September 2017

1 reference

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Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers

10 September 2017

1 reference

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RBM4 interacts with an intronic element and stimulates tau exon 10 inclusion

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Exon selection in alpha-tropomyosin mRNA is regulated by the antagonistic action of RBM4 and PTB.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Understanding alternative splicing: towards a cellular code

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Identification and analysis of alternative splicing events conserved in human and mouse

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Systematic identification and analysis of exonic splicing silencers.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Single nucleotide polymorphism-based validation of exonic splicing enhancers

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Computational definition of sequence motifs governing constitutive exon splicing.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

CLIP identifies Nova-regulated RNA networks in the brain

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

A 3' exonuclease that specifically interacts with the 3' end of histone mRNA

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

A novel splicing regulator shares a nuclear import pathway with SR proteins

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Mechanisms of alternative pre-messenger RNA splicing

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

A general role for splicing enhancers in exon definition

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Predictive identification of exonic splicing enhancers in human genes

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Binding of hnRNP H to an exonic splicing silencer is involved in the regulation of alternative splicing of the rat beta-tropomyosin gene

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

hnRNP A1 recruited to an exon in vivo can function as an exon splicing silencer

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

hnRNP H is a component of a splicing enhancer complex that activates a c-src alternative exon in neuronal cells

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

G triplets located throughout a class of small vertebrate introns enforce intron borders and regulate splice site selection

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Selection of novel exon recognition elements from a pool of random sequences

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Quantitative evaluation of all hexamers as exonic splicing elements

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Dynamic regulation of alternative splicing by silencers that modulate 5' splice site competition

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

Arginine/serine-rich domains of SR proteins can function as activators of pre-mRNA splicing.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3753194

A functional interaction between the histone deacetylase Rpd3 and the corepressor groucho in Drosophila development

17 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB.2377

Mining association rules between sets of items in large databases

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB.2377

31 March 2020

Identifiers

DOI

10.1038/NSMB.2377

1 reference

release_r3zq6kqpyvd7jhpnmuzev65gfi

10 September 2017

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Fatcat

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mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

3753194

1 reference

10 September 2017

1 reference

PMCID

3753194