Mapping a multiplexed zoo of mRNA expression (Q39323495)

5 October 2017

Mapping a multiplexed zoo of mRNA expression (English)

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5 October 2017

24

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5 October 2017

29

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Omar S. Akbari

Omar S Akbari

12

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Tatjana Sauka-Spengler

Tatjana Sauka-Spengler

27

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Rusty Lansford

Rusty Lansford

26

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Ryan Hunter

Ryan C Hunter

7

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Scott E. Fraser

Scott E Fraser

28

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Benjamin Deverman

6

Benjamin E Deverman

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5 October 2017

15

Paul W Sternberg

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5 October 2017

20

Matt van de Rijn

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5 October 2017

25

Barbara Wold

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5 October 2017

Harry M T Choi

1

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5 October 2017

Colby R Calvert

2

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5 October 2017

Naeem Husain

3

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5 October 2017

David Huss

4

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5 October 2017

Julius C Barsi

5

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5 October 2017

Mihoko Kato

8

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5 October 2017

S Melanie Lee

9

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5 October 2017

Anna C T Abelin

10

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5 October 2017

Adam Z Rosenthal

11

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5 October 2017

Yuwei Li

13

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5 October 2017

Bruce A Hay

14

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5 October 2017

Paul H Patterson

16

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5 October 2017

Eric H Davidson

17

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5 October 2017

Sarkis K Mazmanian

18

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5 October 2017

David A Prober

19

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5 October 2017

Jared R Leadbetter

21

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5 October 2017

Dianne K Newman

22

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5 October 2017

Carol Readhead

23

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5 October 2017

Niles A Pierce

29

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5 October 2017

language of work or name

English

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publication date

1 October 2016

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5 October 2017

6

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inferred from page(s)

published in

Development

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5 October 2017

143

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19

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5 October 2017

3632-3637

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Nanoscale imaging of RNA with expansion microscopy

5 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Single-molecule RNA detection at depth by hybridization chain reaction and tissue hydrogel embedding and clearing

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Multiplexed Intact-Tissue Transcriptional Analysis at Cellular Resolution

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Spatio-Temporal Differences in Dystrophin Dynamics at mRNA and Protein Levels Revealed by a Novel FlipTrap Line

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Neural crest migration is driven by a few trailblazer cells with a unique molecular signature narrowly confined to the invasive front

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Use of Hybridization Chain Reaction-Fluorescent In Situ Hybridization To Track Gene Expression by Both Partners during Initiation of Symbiosis

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Optical imaging. Expansion microscopy

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Diagnostic applications of nucleic acid circuits

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Next-generation in situ hybridization chain reaction: higher gain, lower cost, greater durability

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

From cascaded catalytic nucleic acids to enzyme-DNA nanostructures: controlling reactivity, sensing, logic operations, and assembly of complex structures

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Localizing transcripts to single cells suggests an important role of uncultured deltaproteobacteria in the termite gut hydrogen economy

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

DNA-mediated homogeneous binding assays for nucleic acids and proteins.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

RNAscope: a novel in situ RNA analysis platform for formalin-fixed, paraffin-embedded tissues

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

In situ detection and genotyping of individual mRNA molecules

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Determination of gene expression patterns using high-throughput RNA in situ hybridization to whole-mount Drosophila embryos

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Imaging individual mRNA molecules using multiple singly labeled probes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

High-resolution in situ hybridization to whole-mount zebrafish embryos

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Method for multiplex cellular detection of mRNAs using quantum dot fluorescent in situ hybridization

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Gene expression profiling in single cells within tissue

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Triggered amplification by hybridization chain reaction

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Multiplex detection of RNA expression in Drosophila embryos

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Two-color, rolling-circle amplification on antibody microarrays for sensitive, multiplexed serum-protein measurements

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Visualization of single RNA transcripts in situ

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

In situ hybridization analysis of chick embryos in whole mount and tissue sections.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Isoform-specific 3'-untranslated sequences sort alpha-cardiac and beta-cytoplasmic actin messenger RNAs to different cytoplasmic compartments

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Whole-mount in situ hybridization in the mouse embryo: gene expression in three dimensions

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

A novel in situ hybridization signal amplification method based on the deposition of biotinylated tyramine

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Optimizing fluorescent in situ hybridization with rRNA‐targeted oligonucleotide probes for flow cytometric identification of microorganisms

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Formation and detection of RNA-DNA hybrid molecules in cytological preparations

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

A non-radioactive in situ hybridization method for the localization of specific RNAs in Drosophila embryos reveals translational control of the segmentation gene hunchback

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Appendix G: In Situ Hybridization: An Improved Whole-Mount Method for Xenopus Embryos

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Comparison of in-situ hybridization, direct and indirect in-situ PCR as well as tyramide signal amplification for the detection of HPV.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Combinatorial analysis of mRNA expression patterns in mouse embryos using hybridization chain reaction

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

In situ DNA-hybridization chain reaction (HCR): a facilitated in situ HCR system for the detection of environmental microorganisms.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Programmable in situ amplification for multiplexed imaging of mRNA expression

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Detection of two different mRNAs in a single section by dual in situ hybridization: a comparison between colorimetric and fluorescent detection

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

FISHing for chick genes: Triple-label whole-mount fluorescence in situ hybridization detects simultaneous and overlapping gene expression in avian embryos.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Detection of mrnas in sea urchin embryos by in situ hybridization using asymmetric RNA probes.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5087610

Single-copy gene detection using branched DNA (bDNA) in situ hybridization

21 August 2018

1 reference

12 December 2020

In situ genotyping individual DNA molecules by target-primed rolling-circle amplification of padlock probes

1 reference

12 December 2020

An optimized procedure for whole-mount in situ hybridization on mouse embryos and embryoid bodies

1 reference

12 December 2020

Multiplex fluorescent in situ hybridization in zebrafish embryos using tyramide signal amplification

1 reference

12 December 2020

Single-cell gene expression profiling

1 reference

12 December 2020

Identifiers

DOI

10.1242/DEV.140137

1 reference

5 October 2017

1 reference

5 October 2017

PubMed publication ID

27702788

1 reference