Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis (Q39374018)

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English	Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis	scientific article

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scholarly article

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Europe PubMed Central

11 September 2017

Promoter and regulon analysis of nitrogen assimilation factor, sigma54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis (English)

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Europe PubMed Central

11 September 2017

Escherichia coli

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author name string

Kai Zhao

1

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Europe PubMed Central

11 September 2017

Mingzhu Liu

2

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Europe PubMed Central

11 September 2017

Richard R Burgess

3

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Europe PubMed Central

11 September 2017

language of work or name

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publication date

6 December 2009

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Europe PubMed Central

11 September 2017

Nucleic Acids Research

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Europe PubMed Central

11 September 2017

38

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Europe PubMed Central

11 September 2017

4

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Europe PubMed Central

11 September 2017

1273-1283

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Europe PubMed Central

11 September 2017

describes a project that uses

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Europe PubMed Central

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2831329/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

Sigma factors in Pseudomonas aeruginosa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Holoenzyme switching and stochastic release of sigma factors from RNA polymerase in vivo

1 reference

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Immobilization of Escherichia coli RNA polymerase and location of binding sites by use of chromatin immunoprecipitation and microarrays

1 reference

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1 reference

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Systematic mutagenesis of the Escherichia coli genome

1 reference

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11 September 2017

Predicting bacterial transcription units using sequence and expression data

1 reference

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Role of Mobile DNA in the Evolution of Vancomycin-Resistant Enterococcus faecalis

1 reference

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Prediction and overview of the RpoN-regulon in closely related species of the Rhizobiales

1 reference

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11 September 2017

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1 reference

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11 September 2017

LrhA as a new transcriptional key regulator of flagella, motility and chemotaxis genes in Escherichia coli.

1 reference

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11 September 2017

High-density microarray of small-subunit ribosomal DNA probes

1 reference

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11 September 2017

Roles of rpoN, fliA, and flgR in expression of flagella in Campylobacter jejuni

1 reference

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Structural mechanism for rifampicin inhibition of bacterial rna polymerase

1 reference

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BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

1 reference

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11 September 2017

The hook gene (flgE) is expressed from the flgBCDEF operon in Rhodobacter sphaeroides: study of an flgE mutant

1 reference

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11 September 2017

Functional modulation of Escherichia coli RNA polymerase

1 reference

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11 September 2017

The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factor

1 reference

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11 September 2017

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

1 reference

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The bacterial enhancer-binding protein NtrC as a molecular machine

1 reference

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Methods and statistics for combining motif match scores

1 reference

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11 September 2017

A transcriptional activator, FleQ, regulates mucin adhesion and flagellar gene expression in Pseudomonas aeruginosa in a cascade manner

1 reference

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11 September 2017

The complete genome sequence of Escherichia coli K-12

1 reference

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Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions

1 reference

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Glutamate at the site of phosphorylation of nitrogen-regulatory protein NTRC mimics aspartyl-phosphate and activates the protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Fur regulon in gram-negative bacteria. Identification and characterization of new iron-regulated Escherichia coli genes by a fur titration assay.

1 reference

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The sigma factors of Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of sigma 70 and sigma 38.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Cloning and phenotypic characterization of fleS and fleR, new response regulators of Pseudomonas aeruginosa which regulate motility and adhesion to mucin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Culture medium for enterobacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Transcriptional control of flagellar genes in Escherichia coli K-12

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Products of nitrogen regulatory genes ntrA and ntrC of enteric bacteria activate glnA transcription in vitro: evidence that the ntrA product is a sigma factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Formation of pilin in Pseudomonas aeruginosa requires the alternative sigma factor (RpoN) of RNA polymerase

1 reference

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11 September 2017

Sequence logos: a new way to display consensus sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Specific binding of the transcription factor sigma-54 to promoter DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

Isolation and characterization of a polyol-responsive monoclonal antibody useful for gentle purification of Escherichia coli RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

sigma(54) Promoters control expression of genes encoding the hook and basal body complex in Rhodobacter sphaeroides

1 reference

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11 September 2017

Motility of Helicobacter pylori is coordinately regulated by the transcriptional activator FlgR, an NtrC homolog

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

11 September 2017

The flagellar switch genes fliM and fliN of Rhodobacter sphaeroides are contained in a large flagellar gene cluster

1 reference

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14 September 2017

RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12

1 reference

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Modulation of flagellar expression in Escherichia coli by acetyl phosphate and the osmoregulator OmpR.

1 reference

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Sigma factor and sporulation genes inClostridium

1 reference

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14 September 2017

Regulation of the heat-shock response in bacteria

1 reference

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14 September 2017

Transcriptional analysis of the flagellar regulon of Salmonella typhimurium

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

14 September 2017

On the mechanism of rifampicin inhibition of RNA synthesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

25 September 2017

Adaptation in bacterial flagellar and motility systems: from regulon members to 'foraging'-like behavior in E. coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

17 June 2018

Eubacterial sigma-factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

17 June 2018

Differential regulation of multiple overlapping promoters in flagellar class II operons in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

17 June 2018

Factor Stimulating Transcription by RNA Polymerase

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

17 June 2018

Interaction of RNA polymerase with lacUV5 promoter DNA during mRNA initiation and elongation. Footprinting, methylation, and rifampicin-sensitivity changes accompanying transcription initiation.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

17 June 2018

A temporally controlled sigma-factor is required for polar morphogenesis and normal cell division in Caulobacter

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17 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

21 August 2018

Extensive functional overlap between sigma factors in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

21 August 2018

The global transcriptional response of Escherichia coli to induced sigma 32 protein involves sigma 32 regulon activation followed by inactivation and degradation of sigma 32 in vivo.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

21 August 2018

Expression, purification of, and monoclonal antibodies to sigma factors from Escherichia coli.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

21 August 2018

The sigma54 regulon (sigmulon) of Pseudomonas putida.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

21 August 2018

Nucleotide-dependent triggering of RNA polymerase-DNA interactions by an AAA regulator of transcription

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

21 August 2018

Mechanism of action of the Escherichia coli phage shock protein PspA in repression of the AAA family transcription factor PspF.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

21 August 2018

Distinct roles of an alternative sigma factor during both free-swimming and colonizing phases of the Vibrio cholerae pathogenic cycle.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2831329

21 August 2018

Mode of action of rifamycin on the RNA polymerase reaction

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Core RNA polymerase assists binding of the transcription factor sigma 54 to promoter DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sigma factors of Mycobacterium tuberculosis

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

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based on heuristic

inferred from PubMed ID database lookup

Two novel flagellar components and H-NS are involved in the motor function of Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of potential sigma(N)-dependent promoters in bacterial genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcription of the ibpB heat-shock gene is under control of sigma(32)- and sigma(54)-promoters, a third regulon of heat-shock response

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A fast Western blot procedure improved for quantitative analysis by direct fluorescence labeling of primary antibodies

1 reference

https://pubmed.ncbi.nlm.nih.gov/19969540

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1093/NAR/GKP1123

1 reference

Europe PubMed Central

11 September 2017

release_mmzjwwb5ezevtpiinnt2i4ip2i

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https://api.fatcat.wiki/v0/release/mmzjwwb5ezevtpiinnt2i4ip2i

24 November 2022

based on heuristic

mapped directly with Wikidata item

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Europe PubMed Central

11 September 2017

1 reference

Europe PubMed Central

11 September 2017

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