The fragile X chromosome (GCC) repeat folds into a DNA tetraplex at neutral pH. (Q39488976)

12 September 2017

The fragile X chromosome (GCC) repeat folds into a DNA tetraplex at neutral pH. (English)

1 reference

12 September 2017

P Fojtík

1

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12 September 2017

M Vorlícková

series ordinal

2

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12 September 2017

language of work or name

English

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publication date

1 November 2001

1 reference

12 September 2017

Nucleic Acids Research

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12 September 2017

29

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12 September 2017

22

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12 September 2017

4684-4690

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DNA repeat expansions and human disease

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Understanding the molecular basis of fragile X syndrome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

DNA secondary structure: a common and causative factor for expansion in human disease

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Triplet repeats form secondary structures that escape DNA repair in yeast

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar*

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Phosphorylation of the cAMP response element binding protein CREB by cAMP-dependent protein kinase A and glycogen synthase kinase-3 alters DNA-binding affinity, conformation, and increases net charge

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Genetically unstable CXG repeats are structurally dynamic and have a high propensity for folding. An NMR and UV spectroscopic study

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Molecular basis of genetic instability of triplet repeats

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Solution structures of the individual single strands of the fragile X DNA triplets (GCC)n.(GGC)n

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

5'-CGA sequence is a strong motif for homo base-paired parallel-stranded DNA duplex as revealed by NMR analysis

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

A tetrameric DNA structure with protonated cytosine.cytosine base pairs

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Intramolecular folding of a fragment of the cytosine-rich strand of telomeric DNA into an i-motif

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Evidence for intramolecularly folded i-DNA structures in biologically relevant CCC-repeat sequences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Hairpins are formed by the single DNA strands of the fragile X triplet repeats: structure and biological implications

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

12 September 2017

Parallel stranded DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Triple helix formation by oligopurine-oligopyrimidine DNA fragments. Electrophoretic and thermodynamic behavior

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Aqueous trifluorethanol solutions simulate the environment of DNA in the crystalline state

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Conformational properties of DNA dodecamers containing four tandem repeats of the CNG triplets

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Trinucleotide repeats associated with human disease

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Hypermethylation of telomere-like foldbacks at codon 12 of the human c-Ha-ras gene and the trinucleotide repeat of the FMR-1 gene of fragile X.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Compact structures of d(CNG)noligonucleotides in solution and their possible relevance to Fragile X and related human genetic diseases

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Mechanisms of DNA expansion

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Secondary structures in d(CGG) and d(CCG) repeat tracts

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Conformational transitions of alternating purine-pyrimidine DNAs in perchlorate ethanol solutions

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Acid multimers of oligodeoxycytidine strands: stoichiometry, base-pair characterization, and proton exchange properties

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Oligodeoxynucleotide folding in solution: loop size and stability of B-hairpins

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Hairpin structures in synthetic oligodeoxynucleotides: sequence effects on the duplex-to-hairpin transition

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Fragile X DNA triplet repeats, (GCC)n, form hairpins with single hydrogen-bonded cytosine.cytosine mispairs at the CpG sites: isotope-edited nuclear magnetic resonance spectroscopy on (GCC)n with selective 15N4-labeled cytosine bases.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Estimation of molecular radius, free mobility, and valence using polyacrylamide gel electrophoresis

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92515

Trinucleotide repeat expansion and human disease

21 August 2018

1 reference

12 December 2020

Spectroscopic evidence for the formation of four-stranded solution structure of oligodeoxycytidine phosphorothioate

1 reference

12 December 2020

At physiological pH, d(CCG)15 forms a hairpin containing protonated cytosines and a distorted helix

1 reference

12 December 2020

Repeat expansion--all in a flap?

1 reference

12 December 2020

Circular dichroism spectroscopy analysis of conformational transitions of a 54 base pair DNA duplex composed of alternating CGCGCG and TATATA blocks

1 reference

12 December 2020

Trinucleotide repeat DNA structures: dynamic mutations from dynamic DNA

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12 December 2020

1H nuclear magnetic resonance study on equilibrium between two four-stranded solution conformations of short d(CnT)

1 reference

12 December 2020

A nuclease hypersensitive element in the human c-myc promoter adopts several distinct i-tetraplex structures

1 reference

12 December 2020

(CGA)(4): parallel, anti-parallel, right-handed and left-handed homoduplexes of a trinucleotide repeat DNA

1 reference

12 December 2020

Conformational properties of DNA fragments containing GAC trinucleotide repeats associated with skeletal displasias

1 reference

12 December 2020

Circular dichroism of DNA: temperature and salt dependence

1 reference

12 December 2020

The ultraviolet circular dichroism of some natural DNAs and an analysis of the spectra for sequence information

1 reference

12 December 2020

The analysis of circular dichroism spectra of natural DNAs using spectral components from synthetic DNAs

1 reference

12 December 2020

Unusual DNA conformation at low pH revealed by NMR: parallel-stranded DNA duplex with homo base pairs

1 reference

12 December 2020

CD spectral comparisons of the acid-induced structures of poly[d(A)], poly[r(A)], poly[d(C)], and poly[r(C)]

1 reference

12 December 2020

Absorption and circular dichroism spectroscopy of nucleic acid duplexes and triplexes

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/29.22.4684

1 reference

release_4ovmqq2emvaonltut4ehto6ba4

12 September 2017

0 references

1 reference

12 September 2017

PubMed publication ID

11713318

1 reference