Sea urchin mtDBP is a two-faced transcription termination factor with a biased polarity depending on the RNA polymerase. (Q39488998)

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3 December 2019

title

Sea urchin mtDBP is a two-faced transcription termination factor with a biased polarity depending on the RNA polymerase (English)

1 reference

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3 December 2019

1 reference

Patricio Fernández-Silva

1

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3 December 2019

author name string

P L Polosa

2

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3 December 2019

M Roberti

3

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3 December 2019

B Di Ponzio

4

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3 December 2019

M N Gadaleta

5

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3 December 2019

J Montoya

6

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3 December 2019

P Cantatore

7

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3 December 2019

language of work or name

English

0 references

publication date

1 November 2001

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3 December 2019

published in

Nucleic Acids Research

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3 December 2019

volume

29

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3 December 2019

issue

22

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3 December 2019

page(s)

4736-4743

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In vivo mitochondrial DNA-protein interactions in sea urchin eggs and embryos

3 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Purification and characterization of a mitochondrial, single-stranded-DNA-binding protein from Paracentrotus lividus eggs

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

The human mitochondrial transcription termination factor (mTERF) is a multizipper protein but binds to DNA as a monomer, with evidence pointing to intramolecular leucine zipper interactions.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Two distinct, sequence-specific DNA-binding proteins interact independently with the major replication pause region of sea urchin mtDNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Characterization of a high-affinity binding site for a DNA-binding protein from sea urchin embryo mitochondria.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Sequence and organization of the human mitochondrial genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Sea urchin egg mitochondrial DNA contains a short displacement loop (D-loop) in the replication origin region

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Mutually exclusive synthetic pathways for sea urchin mitochondrial rRNA and mRNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Identification of two homologous mitochondrial DNA sequences, which bind strongly and specifically to a mitochondrial protein of Paracentrotus lividus

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Characterization of elongating T7 and SP6 RNA polymerases and their response to a roadblock generated by a site-specific DNA binding protein

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Cloning and characterisation of mtDBP, a DNA-binding protein which binds two distinct regions of sea urchin mitochondrial DNA.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Human mitochondrial transcription termination exhibits RNA polymerase independence and biased bipolarity in vitro.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Termination of mammalian rDNA replication: polar arrest of replication fork movement by transcription termination factor TTF-I.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Complete sequence of the mitochondrial DNA in the sea urchin Arbacia lixula: conserved features of the echinoid mitochondrial genome

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Nucleotide sequence and gene organization of sea urchin mitochondrial DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Termination of transcription in human mitochondria: identification and purification of a DNA binding protein factor that promotes termination

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

The complete nucleotide sequence, gene organization, and genetic code of the mitochondrial genome of Paracentrotus lividus

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Elongation by Escherichia coli RNA polymerase is blocked in vitro by a site-specific DNA binding protein

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

DNA-helicase activity from sea urchin mitochondria.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=92518

Mapping and characterization of Paracentrotus lividus mitochondrial transcripts: multiple and overlapping transcription units

21 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11713324

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Replication origins and pause sites in sea urchin mitochondrial DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11713324

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Purification and characterization of a mitochondrial DNA-binding protein that binds to double-stranded and single-stranded sequences of Paracentrotus lividus mitochondrial DNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/11713324

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/29.22.4736

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11713324%20AND%20SRC:MED&resulttype=core&format=json

3 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11713324%20AND%20SRC:MED&resulttype=core&format=json

3 December 2019

PubMed publication ID

11713324

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:11713324%20AND%20SRC:MED&resulttype=core&format=json