SmpB functions in various steps of trans-translation (Q39538382)

12 September 2017

SmpB functions in various steps of trans-translation (English)

1 reference

12 September 2017

Kyoko Hanawa-Suetsugu

1

1 reference

12 September 2017

Mitsuru Takagi

2

1 reference

12 September 2017

Hachiro Inokuchi

3

1 reference

12 September 2017

Hyouta Himeno

4

1 reference

12 September 2017

Akira Muto

5

1 reference

12 September 2017

language of work or name

English

0 references

publication date

1 April 2002

1 reference

12 September 2017

Nucleic Acids Research

1 reference

12 September 2017

30

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12 September 2017

7

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12 September 2017

1620-1629

1 reference

Importance of the conserved nucleotides around the tRNA-like structure of Escherichia coli transfer-messenger RNA for protein tagging

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Transfer RNA(Ala) recognizes transfer-messenger RNA with specificity; a functional complex prior to entering the ribosome?

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Identification of endogenous SsrA-tagged proteins reveals tagging at positions corresponding to stop codons.

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Protein factors associated with the SsrA.SmpB tagging and ribosome rescue complex

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Binding and cross-linking of tmRNA to ribosomal protein S1, on and off the Escherichia coli ribosome

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

3' exoribonucleolytic trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Probing the structure of the Escherichia coli 10Sa RNA (tmRNA).

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Phylogenetic analysis of tmRNA secondary structure.

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

C-terminal extension of truncated recombinant proteins in Escherichia coli with a 10Sa RNA decapeptide.

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

The physical map of the whole E. coli chromosome: application of a new strategy for rapid analysis and sorting of a large genomic library

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

An NMR and mutational analysis of an RNA pseudoknot of Escherichia coli tmRNA involved in trans-translation

13 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

SsrA-mediated tagging and proteolysis of LacI and its role in the regulation of lac operon

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

tRNA-like structures in 10Sa RNAs of Mycoplasma capricolum and Bacillus subtilis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Determinants on tmRNA for initiating efficient and precise trans-translation: some mutations upstream of the tag-encoding sequence of Escherichia coli tmRNA shift the initiation point of trans-translation in vitro

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Resuming translation on tmRNA: a unique mode of determining a reading frame

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

SsrA-mediated peptide tagging caused by rare codons and tRNA scarcity

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA).

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Presence and location of modified nucleotides in Escherichia coli tmRNA: structural mimicry with tRNA acceptor branches

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

A bacterial RNA that functions as both a tRNA and an mRNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Structure and function of 10Sa RNA: trans-translation system

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Evidence for interaction of an aminoacyl transfer RNA synthetase with a region important for the identity of its cognate transfer RNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

The effect of Escherichia coli ribosomal protein S1 on the translational specificity of bacterial ribosomes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Aminoacylation of alanine minihelices. “Discriminator” base modulates transition state of single turnover reaction

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Kinetic parameters for tmRNA binding to alanyl-tRNA synthetase and elongation factor Tu from Escherichia coli.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Aminoacylated tmRNA from Escherichia coli interacts with prokaryotic elongation factor Tu.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Functional and structural analysis of a pseudoknot upstream of the tag-encoded sequence in E. coli tmRNA.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

In vitro trans translation mediated by alanine-charged 10Sa RNA.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Structural organization of Escherichia coli tmRNA.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

10Sa RNA is associated with 70S ribosome particles in Escherichia coli.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

Changing the identity of a tRNA by introducing a G-U wobble pair near the 3' acceptor end.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=101834

A simple structural feature is a major determinant of the identity of a transfer RNA

21 August 2018

1 reference

12 December 2020

Identity elements of Escherichia coli tRNA(Ala)

1 reference

12 December 2020

Batchwise purification of specific tRNAs by a solid-phase DNA probe

1 reference

12 December 2020

Interaction of 10Sa RNA with ribosomes in Escherichia coli

1 reference

12 December 2020

A nickel complex cleaves uridine in folded RNA structures: application to E. coli tmRNA and related engineered molecules

1 reference

12 December 2020

Amino acid acceptor identity switch of Escherichia coli tmRNA from alanine to histidine in vitro

1 reference

12 December 2020

1 reference

12 December 2020

tmRDB (tmRNA database)

1 reference

12 December 2020

Three of four pseudoknots in tmRNA are interchangeable and are substitutable with single-stranded RNAs

1 reference

12 December 2020

Mapping contacts between Escherichia coli alanyl tRNA synthetase and 2' hydroxyls using a complete tRNA molecule

1 reference

12 December 2020

Requirement of transfer-messenger RNA for the growth of Bacillus subtilis under stresses

1 reference

12 December 2020

Three-dimensional folding of the tRNA-like domain of Escherichia coli tmRNA

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/30.7.1620

1 reference

12 September 2017

1 reference

12 September 2017

PubMed publication ID

11917023

1 reference