Quantitative comparison of genome-wide DNA methylation mapping technologies. (Q39654059)

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14 February 2020

title

Quantitative comparison of genome-wide DNA methylation mapping technologies (English)

1 reference

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14 February 2020

0 references

1

1 reference

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14 February 2020

Eleni M Tomazou

2

1 reference

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14 February 2020

Arie B Brinkman

3

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Hendrik Gerard Stunnenberg

14 February 2020

9

object named as

Hendrik G Stunnenberg

1 reference

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14 February 2020

8

Andreas Gnirke

1 reference

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14 February 2020

author name string

Fabian Müller

4

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14 February 2020

Femke Simmer

5

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14 February 2020

Hongcang Gu

6

1 reference

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14 February 2020

Natalie Jäger

7

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14 February 2020

Alexander Meissner

10

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14 February 2020

language of work or name

English

0 references

publication date

19 September 2010

1 reference

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14 February 2020

1 reference

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14 February 2020

volume

28

1 reference

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14 February 2020

issue

10

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14 February 2020

page(s)

1106-1114

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Epigenetic biomarker development

14 February 2020

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Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency.

14 September 2017

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14 September 2017

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Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts

14 September 2017

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Human DNA methylomes at base resolution show widespread epigenomic differences

14 September 2017

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DNA methylation differences after exposure to prenatal famine are common and timing- and sex-specific

14 September 2017

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High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers.

14 September 2017

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Histone modifications at human enhancers reflect global cell-type-specific gene expression

14 September 2017

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The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

14 September 2017

1 reference

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Prospects for epigenetic epidemiology

14 September 2017

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MEDME: an experimental and analytical methodology for the estimation of DNA methylation levels based on microarray derived MeDIP-enrichment.

14 September 2017

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Mapping short DNA sequencing reads and calling variants using mapping quality scores

14 September 2017

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A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

14 September 2017

1 reference

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Genome-scale DNA methylation maps of pluripotent and differentiated cells

14 September 2017

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An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs)

14 September 2017

1 reference

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Epigenetic inactivation of the canonical Wnt antagonist SRY-box containing gene 17 in colorectal cancer

14 September 2017

1 reference

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Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping

14 September 2017

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Genome-wide association scan identifies a colorectal cancer susceptibility locus on 11q23 and replicates risk loci at 8q24 and 18q21.

14 September 2017

1 reference

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14 September 2017

Epigenetics in cancer

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DNA methylation biomarkers for blood-based colorectal cancer screening

14 September 2017

1 reference

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Computational epigenetics

14 September 2017

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Primer: epigenetics of autoimmunity

14 September 2017

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G*Power 3: a flexible statistical power analysis program for the social, behavioral, and biomedical sciences

14 September 2017

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CpG island mapping by epigenome prediction

14 September 2017

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Phenotypic plasticity and the epigenetics of human disease

14 September 2017

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Cancer epigenomics: DNA methylomes and histone-modification maps

14 September 2017

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The epigenomics of cancer

14 September 2017

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NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

14 September 2017

1 reference

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Global variation in copy number in the human genome

14 September 2017

1 reference

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DNA methylation profiling of human chromosomes 6, 20 and 22

14 September 2017

1 reference

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Epigenetic gene silencing in cancer – a mechanism for early oncogenic pathway addiction?

14 September 2017

1 reference

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Analysis of repetitive element DNA methylation by MethyLight

14 September 2017

1 reference

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Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066564

BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066564

Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066564

Derivation of Embryonic Stem-Cell Lines from Human Blastocysts

14 September 2017

1 reference

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The Wnt antagonist sFRP1 in colorectal tumorigenesis

14 September 2017

1 reference

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The history of cancer epigenetics

14 September 2017

1 reference

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Statistical significance for genomewide studies

14 September 2017

1 reference

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MethPrimer: designing primers for methylation PCRs

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066564

Repbase update: a database and an electronic journal of repetitive elements

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066564

Cancer epigenetics comes of age

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3066564

Cytosine methylation and the ecology of intragenomic parasites

14 September 2017

1 reference

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Genome-wide DNA methylation profiling using Infinium® assay

14 September 2017

1 reference

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Genome-scale DNA methylation mapping of clinical samples at single-nucleotide resolution

14 September 2017

1 reference

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MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome

14 September 2017

1 reference

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Wnt antagonist gene DKK2 is epigenetically silenced and inhibits renal cancer progression through apoptotic and cell cycle pathways

14 September 2017

1 reference

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GATA4 and GATA5 are potential tumor suppressors and biomarkers in colorectal cancer

14 September 2017

1 reference

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High-throughput bisulfite sequencing in mammalian genomes

14 September 2017

1 reference

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Distinct DNA methylation patterns characterize differentiated human embryonic stem cells and developing human fetal liver

14 September 2017

1 reference

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Genome-wide tracking of unmethylated DNA Alu repeats in normal and cancer cells.

14 September 2017

1 reference

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Creation of genomic methylation patterns

14 September 2017

1 reference

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Comprehensive high-throughput arrays for relative methylation (CHARM).

25 September 2017

1 reference

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Global analysis of DNA methylation and transcription of human repetitive sequences.

15 June 2018

1 reference

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Methylated-CpG island recovery assay: a new technique for the rapid detection of methylated-CpG islands in cancer

21 August 2018

1 reference

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DNA methylation patterns and epigenetic memory

21 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.1681

Protocol matters: which methylome are you actually studying?

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNBT.1681

CpG island methylator phenotype in cancer

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20852634

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Excessive CpG island hypermethylation in cancer cell lines versus primary human malignancies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20852634

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DNA-methylation analysis by the bisulfite-assisted genomic sequencing method

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20852634

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NBT.1681

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20852634%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20852634%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

PubMed publication ID

20852634

1 reference