A model for dsDNA translocation revealed by a structural motif common to RecG and Mfd proteins (Q39698916)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12554672%20AND%20SRC:MED&resulttype=core&format=json

17 December 2019

title

A model for dsDNA translocation revealed by a structural motif common to RecG and Mfd proteins (English)

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17 December 2019

2

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17 December 2019

Gary J Sharples

3

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17 December 2019

author name string

Akeel A Mahdi

1

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17 December 2019

Qin Wen

4

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17 December 2019

Robert G Lloyd

5

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17 December 2019

language of work or name

English

0 references

publication date

1 February 2003

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17 December 2019

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17 December 2019

volume

22

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17 December 2019

issue

3

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17 December 2019

page(s)

724-734

1 reference

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Chromatin remodeling by RSC involves ATP-dependent DNA translocation

17 December 2019

cites work

1 reference

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Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects

14 September 2017

1 reference

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Genome stability and the processing of damaged replication forks by RecG.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

E. coli Transcription repair coupling factor (Mfd protein) rescues arrested complexes by promoting forward translocation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Novel ATPase of SNF2-like protein family interacts with androgen receptor and modulates androgen-dependent transcription

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Modularity and specialization in superfamily 1 and 2 helicases

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Helicase structure and mechanism

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Direct measurement of single-stranded DNA translocation by PcrA helicase using the fluorescent base analogue 2-aminopurine

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Structural analysis of DNA replication fork reversal by RecG

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Regulation of DNA replication fork progression through damaged DNA by the Mec1/Rad53 checkpoint

14 September 2017

1 reference

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DNA replication meets genetic exchange: chromosomal damage and its repair by homologous recombination

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Formation of Holliday junctions by regression of nascent DNA in intermediates containing stalled replication forks: RecG stimulates regression even when the DNA is negatively supercoiled

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Rescue of stalled replication forks by RecG: simultaneous translocation on the leading and lagging strand templates supports an active DNA unwinding model of fork reversal and Holliday junction formation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

A chromatin remodelling complex involved in transcription and DNA processing.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Uncoupling DNA translocation and helicase activity in PcrA: direct evidence for an active mechanism.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Characterisation of the catalytically active form of RecG helicase

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Measuring motion on DNA by the type I restriction endonuclease EcoR124I using triplex displacement

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Replication and recombination intersect

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

The way things move: looking under the hood of molecular motor proteins

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

The importance of repairing stalled replication forks

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Helicase motifs: the engine that powers DNA unwinding

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Holliday junction processing in bacteria: insights from the evolutionary conservation of RuvABC, RecG, and RusA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Nucleosome mobilization catalysed by the yeast SWI/SNF complex

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

RecG helicase activity at three- and four-strand DNA structures.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Defending genome integrity during DNA replication: a proposed role for RecQ family helicases

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Single amino acid substitutions in the HsdR subunit of the type IB restriction enzyme EcoAI uncouple the DNA translocation and DNA cleavage activities of the enzyme

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

An engine for nucleosome remodeling

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

JPred: a consensus secondary structure prediction server

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

DNA binding and helicase domains of the Escherichia coli recombination protein RecG.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Sequence specificity and biochemical characterization of the RusA Holliday junction resolvase of Escherichia coli.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

ATP-dependent resolution of R-loops at the ColE1 replication origin by Escherichia coli RecG protein, a Holliday junction-specific helicase

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Functional analysis of the DNA-stimulated ATPase domain of yeast SWI2/SNF2.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

PHD: predicting one-dimensional protein structure by profile-based neural networks

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Branch migration of Holliday junctions: identification of RecG protein as a junction specific DNA helicase

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Modulation of recombination and DNA repair by the RecG and PriA helicases of Escherichia coli K-12.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Mechanisms of transcription-repair coupling and mutation frequency decline

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Dissociation of synthetic Holliday junctions by E. coli RecG protein.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

The DNA replication protein PriA and the recombination protein RecG bind D-loops.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

The RecG branch migration protein of Escherichia coli dissociates R-loops.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

DnaB drives DNA branch migration and dislodges proteins while encircling two DNA strands.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Substrate specificity of RusA resolvase reveals the DNA structures targeted by RuvAB and RecG in vivo.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Direct rescue of stalled DNA replication forks via the combined action of PriA and RecG helicase activities.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

The DNA translocation and ATPase activities of restriction-deficient mutants of Eco KI.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

ATP-dependent histone octamer sliding mediated by the chromatin remodeling complex NURF.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Targeting Holliday junctions by the RecG branch migration protein of Escherichia coli.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=140728

Modulation of RNA polymerase by (p)ppGpp reveals a RecG-dependent mechanism for replication fork progression

20 August 2018

1 reference

12 December 2020

Mechanisms for ATP-dependent chromatin remodelling

1 reference

12 December 2020

Kinetic models of translocation, head-on collision, and DNA cleavage by type I restriction endonucleases

1 reference

12 December 2020

Direct observation of DNA translocation and cleavage by the EcoKI endonuclease using atomic force microscopy

1 reference

12 December 2020

On the structure and operation of type I DNA restriction enzymes

1 reference

12 December 2020

Identifiers

DOI

10.1093/EMBOJ/CDG043

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12554672%20AND%20SRC:MED&resulttype=core&format=json

17 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:12554672%20AND%20SRC:MED&resulttype=core&format=json

17 December 2019

1 reference