The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoiling (Q39719585)

14 September 2017

The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoiling (English)

1 reference

14 September 2017

Nicholas R. Cozzarelli

series ordinal

3

object named as

N R Cozzarelli

1 reference

14 September 2017

V V Rybenkov

1

1 reference

14 September 2017

A V Vologodskii

series ordinal

2

1 reference

14 September 2017

language of work or name

English

0 references

publication date

1 April 1997

1 reference

14 September 2017

Nucleic Acids Research

1 reference

14 September 2017

25

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14 September 2017

7

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14 September 2017

1412-1418

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Effects of Na+ and Mg2+ on the structures of supercoiled DNAs: comparison of simulations with experiments

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Effect of bending strain on the torsion elastic constant of DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Probability of DNA knotting and the effective diameter of the DNA double helix

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Knotting of a DNA chain during ring closure

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Torison dynamics and depolarization of fluorescence of linear macromolecules. II. Fluorescence polarization anisotropy measurements on a clean viral phi 29 DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Unwinding of double-stranded DNA helix by dehydration

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Energetics of B-to-Z transition in DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Torsional and bending rigidity of the double helix from data on small DNA rings

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Sequence-dependent energetics of the B-Z transition in supercoiled DNA containing nonalternating purine-pyrimidine sequences

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Action of nicking-closing enzyme on supercoiled and nonsupercoiled closed circular DNA: formation of a Boltzmann distribution of topological isomers

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Structure and reactions of closed duplex DNA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Conformational fluctuations of DNA helix

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Fluctuations in superhelical DNA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

The helical repeat of DNA at high temperature

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Conformational and thermodynamic properties of supercoiled DNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

The number of superhelical turns in native Virion SV40 DNA and Minicol DNA determined by the band counting method

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

The twist, writhe and overall shape of supercoiled DNA change during counterion-induced transition from a loosely to a tightly interwound superhelix. Possible implications for DNA structure in vivo

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Modeling of long-range electrostatic interactions in DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Monte Carlo computation of the supercoiling energy, the sedimentation constant, and the radius of gyration of unknotted and knotted circular DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

SV40 DNA: quantitative conversion of closed circular to open circular form by an ethidium bromide-restricted endonuclease.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Osmotic pressure of DNA solutions and effective diameter of the double helix

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Topological distributions and the torsional rigidity of DNA. A Monte Carlo study of DNA circles.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

The helical repeat of double-stranded DNA varies as a function of catenation and supercoiling

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Variance of writhe for wormlike DNA rings with excluded volume.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Structure of plectonemically supercoiled DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Competing B-Z and helix-coil conformational transitions in supercoiled plasmid DNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Energetics of DNA twisting. II. Topoisomer analysis.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

DNA supercoiling and its effects on DNA structure and function.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=146597

Interactions of highly charged colloidal cylinders with applications to double-stranded

20 August 2018

1 reference

12 December 2020

Supercoiling in closed circular DNA: dependence upon ion type and concentration

1 reference

12 December 2020

The statistics of superhelicity

1 reference

12 December 2020

Purification and characterization of wheat germ DNA topoisomerase I (nicking-closing enzyme)

1 reference

12 December 2020

Thermodynamics and equilibrium sedimentation analysis of the close approach of DNA molecules and a molecular ordering transition

1 reference

12 December 2020

Catenation of DNA rings by topoisomerases. Mechanism of control by spermidine

1 reference

12 December 2020

Torsional rigidity of DNA and length dependence of the free energy of DNA supercoiling

1 reference

12 December 2020

Rotational dynamics of DNA from 10(-10) to 10(-5) seconds: comparison of theory with optical experiments

1 reference

12 December 2020

An assessment of the Z-DNA forming potential of alternating dA-dT stretches in supercoiled plasmids

1 reference

12 December 2020

Moments for DNA topoisomers: the helical wormlike chain

1 reference

12 December 2020

Counterion exchange reactions on DNA: Monte Carlo and Poisson-Boltzmann analysis

1 reference

12 December 2020

Variation of the average rotation angle of the DNA helix and the superhelical turns of covalently closed cyclic lambda DNA

1 reference

12 December 2020

The energetics of the B-Z transition in DNA

1 reference

12 December 2020

Effect of excluded volume on topological properties of circular DNA

1 reference

12 December 2020

Application of the method of phage T4 DNA ligase-catalyzed ring-closure to the study of DNA structure. II. NaCl-dependence of DNA flexibility and helical repeat

1 reference

12 December 2020

Computer simulation of DNA supercoiling

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/25.7.1412

1 reference

14 September 2017

1 reference

14 September 2017

PubMed publication ID

9060437

1 reference