Steady-state and time-resolved fluorescence studies indicate an unusual conformation of 2-aminopurine within ATAT and TATA duplex DNA sequences (Q39749618)

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English	Steady-state and time-resolved fluorescence studies indicate an unusual conformation of 2-aminopurine within ATAT and TATA duplex DNA sequences	scientific article

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scholarly article

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Europe PubMed Central

PMC publication ID

14 September 2017

Steady-state and time-resolved fluorescence studies indicate an unusual conformation of 2-aminopurine within ATAT and TATA duplex DNA sequences (English)

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

author name string

Priyamvada Rai

1

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Europe PubMed Central

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14 September 2017

Timothy David Cole

2

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Europe PubMed Central

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14 September 2017

Elizabeth Thompson

3

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Europe PubMed Central

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14 September 2017

David P Millar

4

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Europe PubMed Central

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14 September 2017

Stuart Linn

5

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Europe PubMed Central

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14 September 2017

language of work or name

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publication date

1 May 2003

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Europe PubMed Central

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14 September 2017

Nucleic Acids Research

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Europe PubMed Central

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14 September 2017

31

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Europe PubMed Central

PMC publication ID

14 September 2017

9

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Europe PubMed Central

PMC publication ID

14 September 2017

2323-2332

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Europe PubMed Central

PMC publication ID

14 September 2017

Enzymatic synthesis of deoxyribonucleic acid. VII. Synthesis of a polymer of deoxyadenylate and deoxythymidylate.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

14 September 2017

Conformation and dynamics of abasic sites in DNA investigated by time-resolved fluorescence of 2-aminopurine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

14 September 2017

Probing structure and dynamics of DNA with 2-aminopurine: effects of local environment on fluorescence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

14 September 2017

2-Aminopurine fluorescence quenching and lifetimes: role of base stacking

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

14 September 2017

Signals for TBP/TATA box recognition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

14 September 2017

Sequence dependence of energy transfer in DNA oligonucleotides

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

14 September 2017

Structure determination and analysis of helix parameters in the DNA decamer d(CATGGCCATG)2 comparison of results from NMR and crystallography

1 reference

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14 September 2017

Nuclear magnetic resonance structure of d(GCATATGATAG). d(CTATCATATGC): a consensus sequence for promoters recognized by sigma K RNA polymerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

14 September 2017

2-Aminopurine fluorescence studies of base stacking interactions at abasic sites in DNA: metal-ion and base sequence effects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

14 September 2017

Crystal structure of a human TATA box-binding protein/TATA element complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

14 September 2017

Synthesis and properties of defined DNA oligomers containing base mispairs involving 2-aminopurine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

14 September 2017

Base pairing and mutagenesis: observation of a protonated base pair between 2-aminopurine and cytosine in an oligonucleotide by proton NMR

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

14 September 2017

Effect of librational motion on fluorescence depolarization and nuclear magnetic resonance relaxation in macromolecules and membranes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

25 September 2017

Sequence-dependent DNA structure: tetranucleotide conformational maps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

15 June 2018

On the analysis of fluorescence decay kinetics by the method of least-squares

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

15 June 2018

Dynamics of mismatched base pairs in DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

15 June 2018

Alternative structures for alternating poly(dA-dT) tracts: the structure of the B-DNA decamer C-G-A-T-A-T-A-T-C-G

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

15 June 2018

A theory of fluorescence polarization decay in membranes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

15 June 2018

2-Aminopurine optical spectra: Solvent, pentose ring, and DNA helix melting dependence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

20 August 2018

Localization of Fe(2+) at an RTGR sequence within a DNA duplex explains preferential cleavage by Fe(2+) and H2O2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=154225

20 August 2018

Conformational transitions in thymidine bulge-containing deoxytridecanucleotide duplexes. Role of flanking sequence and temperature in modulating the equilibrium between looped out and stacked thymidine bulge states

1 reference

https://pubmed.ncbi.nlm.nih.gov/12711677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA bends in TATA-binding protein-TATA complexes in solution are DNA sequence-dependent

1 reference

https://pubmed.ncbi.nlm.nih.gov/12711677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and dynamics of a fluorescent DNA oligomer containing the EcoRI recognition sequence: fluorescence, molecular dynamics, and NMR studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/12711677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Melting and premelting transitions of an oligomer measured by DNA base fluorescence and absorption

1 reference

https://pubmed.ncbi.nlm.nih.gov/12711677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence of 2-aminopurine-cytosine base mispairs involving two hydrogen bonds

1 reference

https://pubmed.ncbi.nlm.nih.gov/12711677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Solution conformation of an abasic DNA undecamer duplex d(CGCACXCACGC) x d(GCGTGTGTGCG): the unpaired thymine stacks inside the helix

1 reference

https://pubmed.ncbi.nlm.nih.gov/12711677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

TATA box DNA deformation with and without the TATA box-binding protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/12711677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

NMR studies of a deoxyribodecanucleotide containing an extrahelical thymidine surrounded by an oligo(dA).oligo(dT) tract

1 reference

https://pubmed.ncbi.nlm.nih.gov/12711677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Excitation energy transfer in DNA: duplex melting and transfer from normal bases to 2-aminopurine

1 reference

https://pubmed.ncbi.nlm.nih.gov/12711677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inherent DNA curvature and flexibility correlate with TATA box functionality

1 reference

https://pubmed.ncbi.nlm.nih.gov/12711677

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKG339

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

14 September 2017

ResearchGate publication ID

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