Immune epitope database analysis resource (IEDB-AR). (Q39786848)

14 September 2017

Immune epitope database analysis resource (IEDB-AR). (English)

1 reference

14 September 2017

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13

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14 September 2017

6

Philip E Bourne

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Julia Ponomarenko

14

Julia Ponomarenko

1 reference

14 September 2017

Soren Buus

8

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Alessandro Sette

15

Alessandro Sette

1 reference

14 September 2017

17

Bjoern Peters

1 reference

14 September 2017

Ole Lund

11

0 references

Huynh-Hoa Bui

7

Huynh-Hoa Bui

1 reference

14 September 2017

12

Claus Lundegaard

1 reference

14 September 2017

10

Jason Greenbaum

1 reference

14 September 2017

3

Yohan Kim

1 reference

14 September 2017

Pernille Haste Andersen

4

Pernille Haste-Andersen

1 reference

14 September 2017

16

Zhanyang Zhu

1 reference

14 September 2017

Qing Zhang

1

1 reference

14 September 2017

Peng Wang

2

1 reference

14 September 2017

John Beaver

5

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14 September 2017

Sune Frankild

9

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14 September 2017

language of work or name

English

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publication date

31 May 2008

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14 September 2017

Nucleic Acids Research

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14 September 2017

36

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14 September 2017

Web Server issue

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14 September 2017

W513-8

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Evaluation of MHC class I peptide binding prediction servers: applications for vaccine research

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Development of an epitope conservancy analysis tool to facilitate the design of epitope-based diagnostics and vaccines

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Prediction of MHC class II binding affinity using SMM-align, a novel stabilization matrix alignment method

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

The major horse allergen Equ c 1 contains one immunodominant region of T cell epitopes.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

EpitopeViewer: a Java application for the visualization and analysis of immune epitopes in the Immune Epitope Database and Analysis Resource (IEDB)

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Towards a consensus on datasets and evaluation metrics for developing B-cell epitope prediction tools

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

A community resource benchmarking predictions of peptide binding to MHC-I molecules

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Improved method for predicting linear B-cell epitopes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

MHC class II proteins and disease: a structural perspective

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Structure of AMA1 from Plasmodium falciparum reveals a clustering of polymorphisms that surround a conserved hydrophobic pocket

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Generating quantitative models describing the sequence specificity of biological processes with the stabilized matrix method

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

The immune epitope database and analysis resource: from vision to blueprint

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Reliable prediction of T-cell epitopes using neural networks with novel sequence representations

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

22 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Measuring the accuracy of diagnostic systems

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Prediction of residues in discontinuous B-cell epitopes using protein 3D structures

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Impact of hepatitis B virus basic core promoter mutations on T cell response to an immunodominant HBx-derived epitope

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Automated generation and evaluation of specific MHC binding predictive tools: ARB matrix applications.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Modeling the MHC class I pathway by combining predictions of proteasomal cleavage, TAP transport and MHC class I binding

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Benchmarking B cell epitope prediction: underperformance of existing methods

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Examining the independent binding assumption for binding of peptide epitopes to MHC-I molecules

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

In SilicoTools for Predicting Peptides Binding to HLA-Class II Molecules: More Confusion than Conclusion

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

The ORION statement: guidelines for transparent reporting of Outbreak Reports and Intervention studies Of Nosocomial infection

2 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage

2 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

2 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2447801

Determination of a HLA II promiscuous peptide cocktail as potential vaccine against EBV latency II malignancies

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18515843

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN254

1 reference

journals/nar/ZhangWKHBBBBFGLLNPSZP08

14 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

14 September 2017

1 reference