Genomic Landscape of Long Terminal Repeat Retrotransposons (LTR-RTs) and Solo LTRs as Shaped by Ectopic Recombination in Chicken and Zebra Finch (Q39787449)

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scientific article published on 6 May 2016

Language	Label	Description	Also known as
English	Genomic Landscape of Long Terminal Repeat Retrotransposons (LTR-RTs) and Solo LTRs as Shaped by Ectopic Recombination in Chicken and Zebra Finch	scientific article published on 6 May 2016

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

14 September 2017

Genomic Landscape of Long Terminal Repeat Retrotransposons (LTR-RTs) and Solo LTRs as Shaped by Ectopic Recombination in Chicken and Zebra Finch (English)

1 reference

Europe PubMed Central

PubMed publication ID

14 September 2017

retrotransposon

0 references

author name string

Yanzhu Ji

1

1 reference

Europe PubMed Central

PubMed publication ID

14 September 2017

J Andrew DeWoody

2

1 reference

Europe PubMed Central

PubMed publication ID

14 September 2017

publication date

6 May 2016

1 reference

Europe PubMed Central

PubMed publication ID

14 September 2017

Journal of Molecular Evolution

1 reference

Europe PubMed Central

PubMed publication ID

14 September 2017

82

1 reference

Europe PubMed Central

PubMed publication ID

14 September 2017

6

1 reference

Europe PubMed Central

PubMed publication ID

14 September 2017

251-263

1 reference

Europe PubMed Central

PubMed publication ID

14 September 2017

The recombination landscape of the zebra finch Taeniopygia guttata genome

1 reference

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The genetic control of meiosis

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Population genomics of transposable elements in Drosophila.

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Endogenous avian leukosis viral loci in the Red Jungle Fowl genome assembly

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The evolution of restricted recombination in sex chromosomes

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Homoplastic microinversions and the avian tree of life

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Origin and evolution of avian microchromosomes

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The relations between recombination rate and patterns of molecular variation and evolution in Drosophila

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Low frequency of paleoviral infiltration across the avian phylogeny

1 reference

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Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison

1 reference

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Profile hidden Markov models

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

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Search and clustering orders of magnitude faster than BLAST

1 reference

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Regional differences in recombination hotspots between two chicken populations

1 reference

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Evolutionary stasis: the stable chromosomes of birds

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LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

1 reference

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DNA sequence organisation in avian genomes.

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Recombination rates and genomic shuffling in human and chimpanzee--a new twist in the chromosomal speciation theory

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Low levels of LTR retrotransposon deletion by ectopic recombination in the gigantic genomes of salamanders

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Evolution of the avian sex chromosomes from an ancestral pair of autosomes

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Evolution of genome content: population dynamics of transposable elements in flies and humans.

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A BIRD'S-EYE VIEW OF THE C-VALUE ENIGMA: GENOME SIZE, CELL SIZE, AND METABOLIC RATE IN THE CLASS AVES

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The smallest avian genomes are found in hummingbirds

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A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate

1 reference

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Broad-scale phylogenomics provides insights into retrovirus-host evolution

1 reference

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The UCSC Genome Browser Database: update 2006

1 reference

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21 January 2018

Endogenous retroviruses of the chicken genome

1 reference

https://api.crossref.org/works/10.1007%2FS00239-016-9741-0

21 January 2018

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

1 reference

https://api.crossref.org/works/10.1007%2FS00239-016-9741-0

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Repbase Update, a database of eukaryotic repetitive elements

1 reference

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21 January 2018

Chromosome size-dependent control of meiotic recombination

1 reference

https://api.crossref.org/works/10.1007%2FS00239-016-9741-0

21 January 2018

Effects of recombination rate on human endogenous retrovirus fixation and persistence.

1 reference

https://api.crossref.org/works/10.1007%2FS00239-016-9741-0

21 January 2018

Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence

2 references

https://api.crossref.org/works/10.1007%2FS00239-016-9741-0

21 January 2018

https://pubmed.ncbi.nlm.nih.gov/27154235

12 December 2020

based on heuristic

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The origins of genome complexity

1 reference

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Recombination drives vertebrate genome contraction

1 reference

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Mutational equilibrium model of genome size evolution

1 reference

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BEDTools: a flexible suite of utilities for comparing genomic features

1 reference

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EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://api.crossref.org/works/10.1007%2FS00239-016-9741-0

21 January 2018

Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor

1 reference

https://api.crossref.org/works/10.1007%2FS00239-016-9741-0

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Nested retrotransposons in the intergenic regions of the maize genome

1 reference

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Genome destabilization by homologous recombination in the germ line

1 reference

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21 January 2018

LTR retrotransposons contribute to genomic gigantism in plethodontid salamanders

1 reference

https://api.crossref.org/works/10.1007%2FS00239-016-9741-0

21 January 2018

The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms

1 reference

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21 January 2018

Repetitive DNA and next-generation sequencing: computational challenges and solutions

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Inference of the protokaryotypes of amniotes and tetrapods and the evolutionary processes of microchromosomes from comparative gene mapping

1 reference

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Jalview Version 2--a multiple sequence alignment editor and analysis workbench

1 reference

https://api.crossref.org/works/10.1007%2FS00239-016-9741-0

21 January 2018

The repetitive landscape of the chicken genome

1 reference

https://api.crossref.org/works/10.1007%2FS00239-016-9741-0

21 January 2018

A unified classification system for eukaryotic transposable elements

1 reference

https://api.crossref.org/works/10.1007%2FS00239-016-9741-0

21 January 2018

Comparative genomics reveals insights into avian genome evolution and adaptation

1 reference

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Complex evolutionary trajectories of sex chromosomes across bird taxa

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Do Plants Have a One-Way Ticket to Genomic Obesity?

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Small genomes for better flyers

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The effect of linkage on limits to artificial selection

1 reference

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Transposable elements in natural populations with a mixture of selected and neutral insertion sites

1 reference

https://pubmed.ncbi.nlm.nih.gov/27154235

12 December 2020

based on heuristic

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A bird's-eye view of the C-value enigma: genome size, cell size, and metabolic rate in the class aves

1 reference

https://pubmed.ncbi.nlm.nih.gov/27154235

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Formation of Solo-LTRs Through Unequal Homologous Recombination Counterbalances Amplifications of LTR Retrotransposons in Rice Oryza sativa L

1 reference

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Recent evolutionary expansion of a subfamily of RTVL-H human endogenous retrovirus-like elements

1 reference

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Meiotic gene conversion and crossing over between dispersed homologous sequences occurs frequently in Saccharomyces cerevisiae

1 reference

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Transposable element numbers in cosmopolitan inversions from a natural population of Drosophila melanogaster.

1 reference

https://pubmed.ncbi.nlm.nih.gov/27154235

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Population frequencies of transposable elements in selfing and outcrossing Caenorhabditis nematodes

1 reference

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On the role of unequal exchange in the containment of transposable element copy number

1 reference

https://pubmed.ncbi.nlm.nih.gov/27154235

12 December 2020

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inferred from PubMed ID database lookup

Chromosome size-dependent control of meiotic reciprocal recombination in Saccharomyces cerevisiae: the role of crossover interference

1 reference

https://pubmed.ncbi.nlm.nih.gov/27154235

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inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-016-9741-0

1 reference

Europe PubMed Central

PubMed publication ID

14 September 2017

release_iwat5t3v7zbvlnt37tk5rjqkxu

0 references

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

14 September 2017

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