Gibbs Recursive Sampler: finding transcription factor binding sites (Q39804560)

14 September 2017

Gibbs Recursive Sampler: finding transcription factor binding sites (English)

1 reference

14 September 2017

William Thompson

1

1 reference

14 September 2017

Eric C Rouchka

series ordinal

2

1 reference

14 September 2017

Charles E Lawrence

series ordinal

3

1 reference

14 September 2017

language of work or name

English

0 references

publication date

1 July 2003

1 reference

14 September 2017

6

1 reference

based on heuristic

inferred from page(s)

published in

Nucleic Acids Research

1 reference

14 September 2017

31

1 reference

14 September 2017

13

1 reference

14 September 2017

3580-3585

1 reference

Factors influencing the identification of transcription factor binding sites by cross-species comparison.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

BALSA: Bayesian algorithm for local sequence alignment

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

A comprehensive library of DNA-binding site matrices for 55 proteins applied to the complete Escherichia coli K-12 genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

Analysis of compositionally biased regions in sequence databases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

Gibbs motif sampling: detection of bacterial outer membrane protein repeats

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

Methods for calculating the probabilities of finding patterns in sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

Basic local alignment search tool

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

Bayesian inference on biopolymer models.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

Genome-specific higher-order background models to improve motif detection.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

A Gibbs sampling method to detect overrepresented motifs in the upstream regions of coexpressed genes.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

Human-mouse genome comparisons to locate regulatory sites

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

ANN-Spec: a method for discovering transcription factor binding sites with improved specificity.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169014

A web site for the computational analysis of yeast regulatory sequences

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12824370

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Finding composite regulatory patterns in DNA sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12824370

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKG608

1 reference

journals/nar/ThompsonRL03

14 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

14 September 2017

1 reference