Protein families and TRIBES in genome sequence space (Q39808508)

14 September 2017

Protein families and TRIBES in genome sequence space (English)

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14 September 2017

1

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14 September 2017

3

Christos A Ouzounis

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14 September 2017

2

Victor Kunin

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14 September 2017

language of work or name

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1 August 2003

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14 September 2017

Nucleic Acids Research

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14 September 2017

31

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14 September 2017

4632-4638

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14 September 2017

15

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describes a project that uses

14 September 2017

SQL

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26 June 2022

https://europepmc.org/article/PMC/PMC169885

inferred from PubMed Central ID database lookup

cites work

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

Myriads of protein families, and still counting

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

Domains, motifs and clusters in the protein universe

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

Studying genomes through the aeons: protein families, pseudogenes and proteome evolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

An efficient algorithm for large-scale detection of protein families

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

The Pfam protein families database

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

Mining the draft human genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

The COG database: new developments in phylogenetic classification of proteins from complete genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

Protein function in the post-genomic era.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

ProtoMap: automatic classification of protein sequences and hierarchy of protein families

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

Global transposon mutagenesis and a minimal Mycoplasma genome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

A genomic perspective on protein families

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

The relation between the divergence of sequence and structure in proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

GeneRAGE: a robust algorithm for sequence clustering and domain detection.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=169885

Functional classes in the three domains of life

20 August 2018

1 reference

12 December 2020

Universal Protein Families and the Functional Content of the Last Universal Common Ancestor

1 reference

12 December 2020

The GeneQuiz Web server: protein functional analysis through the Web

1 reference

12 December 2020

Practical limits of function prediction

1 reference

12 December 2020

GeneTRACE-reconstruction of gene content of ancestral species

1 reference

12 December 2020

Automated genome sequence analysis and annotation

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKG495

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release_3edbzh5p65egvd3juv6oygdc4m

14 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/3edbzh5p65egvd3juv6oygdc4m

24 November 2022

mapped directly with Wikidata item

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14 September 2017

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