Automated structure modeling of large protein assemblies using crosslinks as distance restraints (Q39824438)

14 September 2017

Automated structure modeling of large protein assemblies using crosslinks as distance restraints (English)

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14 September 2017

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10

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4 June 2020

Jan Kosiński

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4 June 2020

Alessandro Ori

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4 June 2020

María Moreno-Morcillo

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4 June 2020

Guillaume Bouvier

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4 June 2020

Paulo Ricardo Batista

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4 June 2020

Christoph W Müller

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4 June 2020

Michael Nilges

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4 June 2020

author name string

Mathias Ferber

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4 June 2020

Umar J Rashid

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4 June 2020

Bernd Simon

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4 June 2020

publication date

25 April 2016

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14 September 2017

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4 June 2020

volume

13

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4 June 2020

issue

6

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4 June 2020

page(s)

515-520

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https://scigraph.springernature.com/pub.10.1038/nmeth.3838

4 June 2020

exact match

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cites work

Cross-linking and mass spectrometry methodologies to facilitate structural biology: finding a path through the maze

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

The TFIIF-like Rpc37/53 dimer lies at the center of a protein network to connect TFIIIC, Bdp1, and the RNA polymerase III active center

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

RNA polymerase III subunit architecture and implications for open promoter complex formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Probing the conformation of the ISWI ATPase domain with genetically encoded photoreactive crosslinkers and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

A mass spectrometry-based hybrid method for structural modeling of protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Molecular architecture of the 26S proteasome holocomplex determined by an integrative approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Molecular architecture of the 40S⋅eIF1⋅eIF3 translation initiation complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Elucidating the mechanism of substrate recognition by the bacterial Hsp90 molecular chaperone

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

HADDOCK versus HADDOCK: new features and performance of HADDOCK2.0 on the CAPRI targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Cross-link guided molecular modeling with ROSETTA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Subunit order of eukaryotic TRiC/CCT chaperonin by cross-linking, mass spectrometry, and combinatorial homology modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Architecture of the RNA polymerase II-TFIIF complex revealed by cross-linking and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Molecular architecture of the yeast Mediator complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Inferential structure determination.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Accurate NMR structures through minimization of an extended hybrid energy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Weighting of experimental evidence in macromolecular structure determination

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

An automatic tool to analyze and cluster macromolecular conformations based on self-organizing maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Structures of complete RNA polymerase II and its subcomplex, Rpb4/7.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Assessment of blind predictions of protein-protein interactions: current status of docking methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Molecular structures of unbound and transcribing RNA polymerase III.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Conformational flexibility of RNA polymerase III during transcriptional elongation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Molecular basis of RNA polymerase III transcription repression by Maf1

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Crystal structure of the 14-subunit RNA polymerase I

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

RNA polymerase I structure and transcription regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Structure-function analysis of hRPC62 provides insights into RNA polymerase III transcription initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Molecular dynamics simulations and functional characterization of the interactions of the PAR2 ectodomain with factor VIIa

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Distance restraints from crosslinking mass spectrometry: mining a molecular dynamics simulation database to evaluate lysine-lysine distances

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

A novel subunit of yeast RNA polymerase III interacts with the TFIIB-related domain of TFIIIB70.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Structural visualization of key steps in human transcription initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Xlink Analyzer: software for analysis and visualization of cross-linking data in the context of three-dimensional structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Solving the RNA polymerase I structural puzzle

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Expanding the chemical cross-linking toolbox by the use of multiple proteases and enrichment by size exclusion chromatography

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

MassMatrix: a database search program for rapid characterization of proteins and peptides from tandem mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

False discovery rate estimation for cross-linked peptides identified by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Protein homology detection by HMM-HMM comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Comparative protein structure modeling using MODELLER

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Nonequilibrium candidate Monte Carlo is an efficient tool for equilibrium simulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

A series of PDB related databases for everyday needs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Protein 3D structure computed from evolutionary sequence variation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNMETH.3838

Identification of cross-linked peptides from large sequence databases

21 January 2018

1 reference

12 December 2020

A mutation in the C31 subunit of Saccharomyces cerevisiae RNA polymerase III affects transcription initiation.

1 reference

12 December 2020

Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS

1 reference

12 December 2020

I-TASSER: fully automated protein structure prediction in CASP8

1 reference

12 December 2020