Prediction of pairing schemes in RNA molecules-loop contributions and energy of wobble and non-wobble pairs (Q39852801)

15 September 2017

1 reference

title

Prediction of pairing schemes in RNA molecules-loop contributions and energy of wobble and non-wobble pairs (English)

1 reference

15 September 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A394764

20 April 2023

transfer RNA

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A394764

20 April 2023

1 reference

https://api.crossref.org/works/10.1016/S0300-9084(80)80227-6

20 April 2023

author name string

J. Ninio

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A394764

20 April 2023

language of work or name

English

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National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=394764

20 April 2023

publication date

1 January 1979

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full work available at URL

15 September 2017

https://api.elsevier.com/content/article/PII:S0300908480802276?httpAccept=text/xml

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https://api.crossref.org/works/10.1016/S0300-9084(80)80227-6

https://api.elsevier.com/content/article/PII:S0300908480802276?httpAccept=text/plain

20 April 2023

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https://api.crossref.org/works/10.1016/S0300-9084(80)80227-6

20 April 2023

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15 September 2017

61

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15 September 2017

10

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15 September 2017

1133-1150

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Computer generation of pairing schemes for RNA molecules

15 September 2017

2

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Computer programs for studying conformations in ribonucleic acids

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5

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Secondary structure of Qbeta RNA

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6

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Computer method for predicting the secondary structure of single-stranded RNA

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7

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20 April 2023

Primary Structure of RNA

8

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Secondary structure of 5 s ribosomal RNA

20 April 2023

9

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Nucleotide sequence of 5 S RNA from Torulopsis utilis

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Nucleotide sequence of Drosophila melanogaster 5S RNA: evidence for a general 5S RNA model

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The evolution of 5S RNA secondary structures

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Improved Estimation of Secondary Structure in Ribonucleic Acids

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Free energy of imperfect nucleic acid helices. II. Small hairpin loops

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Stability of ribonucleic acid double-stranded helices

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18

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20 April 2023

RNA structure

19

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The accuracy of DNA replication

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21

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Modified nucleosides in transfer RNA

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23

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Structure of yeast phenylalanine tRNA at 3 Å resolution

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25

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Transfer RNA: Molecular Structure, Sequence, and Properties

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26

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Three-dimensional structure of transfer RNA

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27

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Empirical Predictions of Protein Conformation

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30

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Stability of RNA hairpin loops: A6-Cm-U6

20 April 2023

32

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Free energy of imperfect nucleic acid helices. 3. Small internal loops resulting from mismatches.

20 April 2023

33

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The stability of RNA hairpin loops containing A-U-G: An-U-G-Um.

20 April 2023

34

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20 April 2023

Nucleic Acids Research

35

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r15

Sprinzl

1978

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The nucleotide sequence of rat liver tRNAAsn

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38

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Primary structure of bovine liver tRNATrp

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The nucleotide sequence of threonine transfer RNA coded by bacteriophage T4

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40

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Compilation of tRNA sequences

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42

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Observations upon copolymers of adenylic and uridylic acids

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43

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Complementary base pairing and the origin of substitution mutations

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44

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Synthesis and thermal melting behavior of oligomer.polymer complexes containing defined lengths of mismatched dA·dG and dG·dG nucleotides

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45

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Oligonucleotide binding to the native and denatured conformers of yeast transfer RNA-3 Lea.

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47

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Kinetics of the renaturation of yeast tRNA3Leu

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48

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Tryptophan transfer RNA as the UGA suppressor

20 April 2023

50

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Characterization of the native and denatured forms of tRNATrp by reaction with kethoxal

20 April 2023

51

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Nuclear magnetic resonance of the base-pairing structure of the native and denatured conformers of Escherichia coli transfer RNATrp

20 April 2023

52

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Denaturation of UGA suppressor tRNATrp from E. coli

20 April 2023

53

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Conformational changes of transfer ribonucleic acid. Comparison of the early melting transition of two tyrosine-specific transfer ribonucleic acids.

20 April 2023

54

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Conformational changes of transfer ribonucleic acid. Relaxation kinetics of the early melting transition of methionine transfer ribonucleic acid (Escherichia coli)

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55

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Doublet frequency analysis of bacterial DNAs

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56

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The genome of simian virus 40.

20 April 2023

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Viral, prokaryote and eukaryote genes contrasted by mRNA sequence indexes

20 April 2023

58

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The distribution of modified and non-modified C-G doublets in BHK-21 cell DNA

20 April 2023

59

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Use of restriction enzymes to study eukaryotic DNA methylation: II. The symmetry of methylated sites supports semi-conservative copying of the methylation pattern.

20 April 2023

60

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Molecular basis of base substitution hotspots in Escherichia coli

20 April 2023

61

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Helix-with-loops structure of polynucleotide. II. Poly(I+CU)

20 April 2023

64

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Cooperative non-enzymatic base recognition and the stability of the G-U wobble pair

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65

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20 April 2023

A Wobbly Double Helix

66

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Circular dichroism evidence for G-U and G-T base pairing in poly[r(G-U)] and poly[d(G-T)]

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67

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Heteropolynucleotides as templates for non-enzymatic polymerizations

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68

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Base pairing structure in the poly d(G-T) double helix: wobble base pairs

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69

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Some molecular details of the secondary structure of ribonucleic acid

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70

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Genetic Code: Emergence of a Symmetrical Pattern.

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73

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Codon--anticodon pairing: the wobble hypothesis

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74

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Conformation of the Anticodon Loop in tRNA

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75

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Molecular Mechanics of Translation : a Reciprocating Ratchet Mechanism

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Derivation of the Secondary Structure of 5S RNA from its Binding of Complementary Oligonucleotides

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Complementary oligonucleotide binding to transfer RNA

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Identification of the single-strand regions in Escherichia coli 5S RNA, native and A forms, by the binding of oligonucleotides

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The effect of specific structural modification on the biological activity of E.coli arginine tRNA

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Interactions between trinucleotides: the electrostatic contribution and its possible relation to the mechanism of translation of the genetic code

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Calculation of interaction energy between triplets in the RNA 11 configuration

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On molecular mechanisms of nucleic acid synthesis fidelity aspects 1. Contribution of base interactions

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The biochemistry of mutagenesis

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Crystal structure of a eukaryotic initiator tRNA

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Recognition in Nucleic Acids and the Anticodon Families

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Stacking of Crick Wobble pair and Watson-Crick pair: stability rules of G-U pairs at ends of helical stems in tRNAs and the relation to codon-anticodon Wobble interaction

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Identifiers

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National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=394764

20 April 2023

1 reference