Computational identification of operons in microbial genomes (Q39860961)

15 September 2017

Computational identification of operons in microbial genomes (English)

1 reference

15 September 2017

4

1 reference

15 September 2017

Yu Zheng

1

1 reference

15 September 2017

Joseph D Szustakowski

series ordinal

2

1 reference

15 September 2017

Lance Fortnow

series ordinal

3

1 reference

15 September 2017

Simon Kasif

series ordinal

5

1 reference

15 September 2017

language of work or name

1 reference

1 August 2002

1 reference

15 September 2017

1 reference

15 September 2017

12

1 reference

15 September 2017

8

1 reference

15 September 2017

1221-1230

1 reference

Genetic and structural organization of the aminophenol catabolic operon and its implication for evolutionary process

15 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Prediction of operons in microbial genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Operons in Escherichia coli: genomic analyses and predictions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

KEGG: kyoto encyclopedia of genes and genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Pathway alignment: application to the comparative analysis of glycolytic enzymes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

The use of gene clusters to infer functional coupling

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

RegulonDB: a database on transcriptional regulation in Escherichia coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Organizing and computing metabolic pathway data in terms of binary relations.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

A reconstruction of the metabolism of Methanococcus jannaschii from sequence data.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Selfish operons and speciation by gene transfer

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

The metabolic pathway collection: an update

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

EcoCyc: an encyclopedia of Escherichia coli genes and metabolism

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Isolation and characterization of Escherichia coli mutants defective for phenylpropionate degradation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Menaquinone (vitamin K2) biosynthesis: evidence that the Escherichia coli menD gene encodes both 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase and alpha-ketoglutarate decarboxylase activities

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Knowledge representation of signal transduction pathways

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Conserved clusters of functionally related genes in two bacterial genomes.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

High-density sampling of a bacterial operon using mRNA differential display

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Evolutionary instability of operon structures disclosed by sequence comparisons of complete microbial genomes.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Reconstruction of amino acid biosynthesis pathways from the complete genome sequence.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=186635

Modularity in the gain and loss of genes: applications for function prediction

20 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12176930

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Initial sequencing and analysis of the human genome

1 reference

28 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1038/35057062

Identifiers

DOI

10.1101/GR.200601

1 reference

15 September 2017

1 reference

15 September 2017

1 reference