Self-splicing of a group I intron reveals partitioning of native and misfolded RNA populations in yeast (Q39963552)

15 September 2017

Self-splicing of a group I intron reveals partitioning of native and misfolded RNA populations in yeast (English)

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15 September 2017

3

Sarah A Woodson

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author name string

Scott A Jackson

series ordinal

1

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15 September 2017

Sujatha Koduvayur

series ordinal

2

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15 September 2017

language of work or name

English

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publication date

24 October 2006

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15 September 2017

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15 September 2017

12

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15 September 2017

12

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15 September 2017

2149-2159

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describes a project that uses

15 September 2017

ImageQuant

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11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC1664722/fullTextXML

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Local kinetic measures of macromolecular structure reveal partitioning among multiple parallel pathways from the earliest steps in the folding of a large RNA molecule

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Intracellular folding of the Tetrahymena group I intron depends on exon sequence and promoter choice

22 September 2017

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22 September 2017

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RNA chaperone StpA loosens interactions of the tertiary structure in the td group I intron in vivo

22 September 2017

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22 September 2017

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22 September 2017

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22 September 2017

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Degradation of ribosomal RNA precursors by the exosome

22 September 2017

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Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae

22 September 2017

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Self-splicing of the Tetrahymena intron from mRNA in mammalian cells

22 September 2017

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22 September 2017

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Evaluating group I intron catalytic efficiency in mammalian cells

22 September 2017

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Folding of a large ribozyme during transcription and the effect of the elongation factor NusA.

22 September 2017

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Exposing the kinetic traps in RNA folding

22 September 2017

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Magnesium-dependent folding of self-splicing RNA: exploring the link between cooperativity, thermodynamics, and kinetics

22 September 2017

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A role for the yeast La protein in U6 snRNP assembly: evidence that the La protein is a molecular chaperone for RNA polymerase III transcripts

22 September 2017

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The structure of the ITS2-proximal stem is required for pre-rRNA processing in yeast

22 September 2017

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Spb4p, an essential putative RNA helicase, is required for a late step in the assembly of 60S ribosomal subunits in Saccharomyces cerevisiae.

22 September 2017

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I-PpoI, the endonuclease encoded by the group I intron PpLSU3, is expressed from an RNA polymerase I transcript

22 September 2017

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New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria

22 September 2017

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5' processing of tRNA precursors can Be modulated by the human La antigen phosphoprotein

22 September 2017

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RNA folding kinetics regulates translation of phage MS2 maturation gene.

22 September 2017

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Structural alterations of the nucleolus in mutants of Saccharomyces cerevisiae defective in RNA polymerase I.

22 September 2017

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Gene RRN4 in Saccharomyces cerevisiae encodes the A12.2 subunit of RNA polymerase I and is essential only at high temperatures

22 September 2017

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Mutations in an essential U2 small nuclear RNA structure cause cold-sensitive U2 small nuclear ribonucleoprotein function by favoring competing alternative U2 RNA structures

22 September 2017

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22 September 2017

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Fate of an intervening sequence ribonucleic acid: excision and cyclization of the Tetrahymena ribosomal ribonucleic acid intervening sequence in vivo

22 September 2017

1 reference

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Specific interaction between the self-splicing RNA of Tetrahymena and its guanosine substrate: implications for biological catalysis by RNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Self-splicing of group I introns

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Synthesis of large rRNAs by RNA polymerase II in mutants of Saccharomyces cerevisiae defective in RNA polymerase I

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Applications of high efficiency lithium acetate transformation of intact yeast cells using single-stranded nucleic acids as carrier

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Exon sequences distant from the splice junction are required for efficient self-splicing of the Tetrahymena IVS.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

The intervening sequence in the 26s rrna coding region of t. thermophila is transcribed within the largest stable precursor for rRNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Localization of transcribed regions on extrachromosomal ribosomal RNA genes of Tetrahymena thermophila by R-loop mapping

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Kinetics of hairpin ribozyme cleavage in yeast.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

In vivo facilitation of Tetrahymena group I intron splicing in Escherichia coli pre-ribosomal RNA.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Kinetics and thermodynamics make different contributions to RNA folding in vitro and in yeast

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Effect of transcription on folding of the Tetrahymena ribozyme

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

A mechanistic framework for co-transcriptional folding of the HDV genomic ribozyme in the presence of downstream sequence

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Distribution of rRNA introns in the three-dimensional structure of the ribosome.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Fast folding of a ribozyme by stabilizing core interactions: evidence for multiple folding pathways in RNA.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Influence of specific mutations on the thermal stability of the td group I intron in vitro and on its splicing efficiency in vivo: a comparative study

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

A cold-sensitive mutation in 16S rRNA provides evidence for helical switching in ribosome assembly

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

The effect of long-range loop-loop interactions on folding of the Tetrahymena self-splicing RNA

2 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Facilitation of Group I Splicing in Vivo: Misfolding of the Tetrahymena IVS and the Role of Ribosomal RNA Exons

2 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

2 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Folding of RNA involves parallel pathways

2 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

Analysis of Rate-Determining Conformational Changes during Self-Splicing of theTetrahymenaIntron†

2 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1664722

The kinetic mechanism of the hairpin ribozyme in vivo: influence of RNA helix stability on intracellular cleavage kinetics

2 December 2018

1 reference

12 December 2020

A Single-Molecule Study of RNA Catalysis and Folding

1 reference

12 December 2020

Measurement of mRNA decay rates in Saccharomyces cerevisiae

1 reference

12 December 2020

Self-splicing of the Tetrahymena pre-rRNA is decreased by misfolding during transcription

1 reference

12 December 2020

The kinetic folding pathway of the Tetrahymena ribozyme reveals possible similarities between RNA and protein folding

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.184206

1 reference

15 September 2017

1 reference

15 September 2017

PubMed publication ID

17135489

1 reference