ProOpDB: Prokaryotic Operon DataBase (Q39972339)

16 September 2017

ProOpDB: Prokaryotic Operon DataBase (English)

1 reference

16 September 2017

Blanca Taboada

1

0 references

Enrique Merino

object named as

Enrique Merino

series ordinal

4

0 references

author name string

Ricardo Ciria

series ordinal

2

1 reference

PMCID

3245079

16 September 2017

Cristian E Martinez-Guerrero

series ordinal

3

1 reference

16 September 2017

16 November 2011

1 reference

16 September 2017

Nucleic Acids Research

1 reference

16 September 2017

40

1 reference

16 September 2017

Database issue

1 reference

16 September 2017

D627-31

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

16 September 2017

start time

12 May 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

ODB: a database for operon organizations, 2011 update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

High accuracy operon prediction method based on STRING database scores.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

CD-HIT Suite: a web server for clustering and comparing biological sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

The Pfam protein families database

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

MicrobesOnline: an integrated portal for comparative and functional genomics

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

KEGG for representation and analysis of molecular networks involving diseases and drugs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

MEME SUITE: tools for motif discovery and searching

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

The Listeria transcriptional landscape from saprophytism to virulence.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

DOOR: a database for prokaryotic operons

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

OperonDB: a comprehensive database of predicted operons in microbial genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

Operon prediction using both genome-specific and general genomic information

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

Toward Automatic Reconstruction of a Highly Resolved Tree of Life

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

A novel method for accurate operon predictions in all sequenced prokaryotes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

The COG database: new developments in phylogenetic classification of proteins from complete genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

Operons in Escherichia coli: genomic analyses and predictions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

Profile hidden Markov models

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

Predicting the operon structure of Bacillus subtilis using operon length, intergene distance, and gene expression information.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245079

20 August 2018

Identifiers

DOI

10.1093/NAR/GKR1020

1 reference

journals/nar/TaboadaCMM12

16 September 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

16 September 2017

1 reference

PMCID

3245079