Linking the T cell receptor to the single cell transcriptome in antigen-specific human T cells (Q40010542)

16 September 2017

title

Linking the T cell receptor to the single cell transcriptome in antigen-specific human T cells (English)

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single cell transcriptomics

16 September 2017

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A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1

1 reference

16 September 2017

Simone Rizzetto

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Rowena A Bull

Rowena A Bull

8

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Katherine Kedzierska

Katherine Kedzierska

6

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Andrew R. Lloyd

Andrew R Lloyd

7

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Brigid D Betz-Stablein

Brigid D Betz-Stablein

4

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author name string

Mehdi R Pirozyan

3

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16 September 2017

Vanessa Venturi

5

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16 September 2017

Fabio Luciani

9

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16 September 2017

publication date

10 February 2016

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Immunology & Cell Biology

16 September 2017

published in

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16 September 2017

volume

94

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16 September 2017

issue

6

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16 September 2017

page(s)

604-611

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describes a project that uses

16 September 2017

blood

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A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

SMART-Seq

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A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

Transcriptional control of effector and memory CD8+ T cell differentiation

7 February 2021

cites work

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https://api.crossref.org/works/10.1038%2FICB.2016.16

Heterogeneity and cell-fate decisions in effector and memory CD8+ T cell differentiation during viral infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

Beyond model antigens: high-dimensional methods for the analysis of antigen-specific T cells

21 January 2018

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Transmitted/Founder Viruses Rapidly Escape from CD8+ T Cell Responses in Acute Hepatitis C Virus Infection

21 January 2018

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https://api.crossref.org/works/10.1038%2FICB.2016.16

Functional implications of T cell receptor diversity

21 January 2018

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https://api.crossref.org/works/10.1038%2FICB.2016.16

Single-cell technologies for monitoring immune systems.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

Disparate individual fates compose robust CD8+ T cell immunity

21 January 2018

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https://api.crossref.org/works/10.1038%2FICB.2016.16

Heterogeneous differentiation patterns of individual CD8+ T cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

Expression profiling. Combinatorial labeling of single cells for gene expression cytometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

Single-Cell Analysis of T-Cell Receptor αβ Repertoire.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

High-throughput identification of antigen-specific TCRs by TCR gene capture

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

Linking T-cell receptor sequence to functional phenotype at the single-cell level

21 January 2018

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https://api.crossref.org/works/10.1038%2FICB.2016.16

Full-length RNA-seq from single cells using Smart-seq2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

Computational and analytical challenges in single-cell transcriptomics

21 January 2018

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https://api.crossref.org/works/10.1038%2FICB.2016.16

Accounting for technical noise in single-cell RNA-seq experiments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

21 January 2018

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https://api.crossref.org/works/10.1038%2FICB.2016.16

WGCNA: an R package for weighted correlation network analysis

21 January 2018

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https://api.crossref.org/works/10.1038%2FICB.2016.16

Design and Analysis of Single-Cell Sequencing Experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

The many important facets of T-cell repertoire diversity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

αβ T cell receptors as predictors of health and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

Bias in the αβ T-cell repertoire: implications for disease pathogenesis and vaccination

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

A prospective study of hepatitis C incidence in Australian prisoners

21 January 2018

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https://api.crossref.org/works/10.1038%2FICB.2016.16

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

Trimmomatic: a flexible trimmer for Illumina sequence data

21 January 2018

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

IgBLAST: an immunoglobulin variable domain sequence analysis tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

T cell receptor αβ diversity inversely correlates with pathogen-specific antibody levels in human cytomegalovirus infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

Recognition of distinct cross-reactive virus-specific CD8+ T cells reveals a unique TCR signature in a clinical setting.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FICB.2016.16

21 January 2018

Identifiers

DOI

10.1038/ICB.2016.16

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16 September 2017

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