A digital compendium of genes mediating the reversible phosphorylation of proteins in fe-deficient Arabidopsis roots (Q40117419)

17 September 2017

A digital compendium of genes mediating the reversible phosphorylation of proteins in fe-deficient Arabidopsis roots (English)

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17 September 2017

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1 reference

Ping Lan

1

1 reference

17 September 2017

Wenfeng Li

series ordinal

2

1 reference

17 September 2017

Wolfgang Schmidt

series ordinal

3

1 reference

17 September 2017

3 June 2013

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Frontiers in Plant Science

17 September 2017

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17 September 2017

4

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17 September 2017

173

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describes a project that uses

17 September 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

affy

object named as

Affy

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Arabidopsis bHLH100 and bHLH101 control iron homeostasis via a FIT-independent pathway

1 reference

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Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis

22 September 2017

1 reference

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Complementary proteome and transcriptome profiling in phosphate-deficient Arabidopsis roots reveals multiple levels of gene regulation.

22 September 2017

1 reference

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Metabolite profile changes in xylem sap and leaf extracts of strategy I plants in response to iron deficiency and resupply

22 September 2017

1 reference

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The Protein Phosphatases and Protein Kinases of Arabidopsis thaliana

22 September 2017

1 reference

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Fitting into the harsh reality: regulation of iron-deficiency responses in dicotyledonous plants

22 September 2017

1 reference

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Monoubiquitin-dependent endocytosis of the iron-regulated transporter 1 (IRT1) transporter controls iron uptake in plants.

22 September 2017

1 reference

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A hitchhiker's guide to the Arabidopsis ferrome

22 September 2017

1 reference

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RNA sequencing: advances, challenges and opportunities

22 September 2017

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The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots

22 September 2017

1 reference

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Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

22 September 2017

1 reference

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Early iron-deficiency-induced transcriptional changes in Arabidopsis roots as revealed by microarray analyses

22 September 2017

1 reference

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The prolyl isomerase PIN1: a pivotal new twist in phosphorylation signalling and disease

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

FIT, the FER-LIKE IRON DEFICIENCY INDUCED TRANSCRIPTION FACTOR in Arabidopsis.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

Approaches for extracting practical information from gene co-expression networks in plant biology

22 September 2017

1 reference

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Expression dynamics of a cellular metabolic network

22 September 2017

1 reference

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Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

22 September 2017

1 reference

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The essential basic helix-loop-helix protein FIT1 is required for the iron deficiency response

22 September 2017

1 reference

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Maize yellow stripe1 encodes a membrane protein directly involved in Fe(III) uptake

22 September 2017

1 reference

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Cluster analysis and display of genome-wide expression patterns

22 September 2017

1 reference

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A novel iron-regulated metal transporter from plants identified by functional expression in yeast.

22 September 2017

1 reference

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FRD3, a member of the multidrug and toxin efflux family, controls iron deficiency responses in Arabidopsis

22 September 2017

1 reference

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IRT1, an Arabidopsis transporter essential for iron uptake from the soil and for plant growth

17 June 2018

1 reference

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A ferric-chelate reductase for iron uptake from soils

17 June 2018

1 reference

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A protein kinase, calcineurin B-like protein-interacting protein Kinase9, interacts with calcium sensor calcineurin B-like Protein3 and regulates potassium homeostasis under low-potassium stress in Arabidopsis

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

Requirement and functional redundancy of Ib subgroup bHLH proteins for iron deficiency responses and uptake in Arabidopsis thaliana

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

Coexpression-based clustering of Arabidopsis root genes predicts functional modules in early phosphate deficiency signaling.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

Ethylene and nitric oxide involvement in the up-regulation of key genes related to iron acquisition and homeostasis in Arabidopsis

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

The ferroportin metal efflux proteins function in iron and cobalt homeostasis in Arabidopsis.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

CHL1 functions as a nitrate sensor in plants.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

Dissecting iron deficiency-induced proton extrusion in Arabidopsis roots.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

Cell identity mediates the response of Arabidopsis roots to abiotic stress.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

FIT interacts with AtbHLH38 and AtbHLH39 in regulating iron uptake gene expression for iron homeostasis in Arabidopsis

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

The FRD3-mediated efflux of citrate into the root vasculature is necessary for efficient iron translocation

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

A protein kinase, interacting with two calcineurin B-like proteins, regulates K+ transporter AKT1 in Arabidopsis.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

AtIREG2 encodes a tonoplast transport protein involved in iron-dependent nickel detoxification in Arabidopsis thaliana roots

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

The Arabidopsis metal tolerance protein AtMTP3 maintains metal homeostasis by mediating Zn exclusion from the shoot under Fe deficiency and Zn oversupply

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

Evidence for a specific uptake system for iron phytosiderophores in roots of grasses.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

Rapid induction of regulatory and transporter genes in response to phosphorus, potassium, and iron deficiencies in tomato roots. Evidence for cross talk and root/rhizosphere-mediated signals

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3669753

Posttranslational regulation of the iron deficiency basic helix-loop-helix transcription factor FIT is affected by iron and nitric oxide

20 August 2018

1 reference

12 December 2020

An iron-induced nitric oxide burst precedes ubiquitin-dependent protein degradation for Arabidopsis AtFer1 ferritin gene expression

1 reference

12 December 2020

Interaction between the bHLH transcription factor FIT and ETHYLENE INSENSITIVE3/ETHYLENE INSENSITIVE3-LIKE1 reveals molecular linkage between the regulation of iron acquisition and ethylene signaling in Arabidopsis

1 reference

12 December 2020

The FRD3 citrate effluxer promotes iron nutrition between symplastically disconnected tissues throughout Arabidopsis development

1 reference

12 December 2020

Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots

1 reference

12 December 2020

Transcriptional profiling of the Arabidopsis iron deficiency response reveals conserved transition metal homeostasis networks

1 reference

12 December 2020

Proteasome-mediated turnover of the transcriptional activator FIT is required for plant iron-deficiency responses

1 reference

12 December 2020

Identifiers

DOI

10.3389/FPLS.2013.00173

1 reference

17 September 2017

1 reference

17 September 2017

PubMed publication ID

23761801

1 reference