A sequence motif in the simian virus 40 (SV40) early core promoter affects alternative splicing of transcribed mRNA. (Q40164682)

18 September 2017

A sequence motif in the simian virus 40 (SV40) early core promoter affects alternative splicing of transcribed mRNA. (English)

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alternative mRNA splicing, via spliceosome

18 September 2017

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simian virus 40

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Elisenda Gendra

1

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18 September 2017

Diana F Colgan

series ordinal

2

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18 September 2017

Brendan Meany

series ordinal

3

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18 September 2017

Maria M Konarska

series ordinal

4

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18 September 2017

language of work or name

English

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publication date

1 March 2007

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Journal of Biological Chemistry

18 September 2017

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18 September 2017

282

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18 September 2017

16

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18 September 2017

11648-11657

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MAZ elements alter transcription elongation and silencing of the fibroblast growth factor receptor 2 exon IIIb

18 September 2017

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

A slow RNA polymerase II affects alternative splicing in vivo

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M611126200

Regulation of alternative splicing by a transcriptional enhancer through RNA pol II elongation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Delay in synthesis of the 3' splice site promotes trans-splicing of the preceding 5' splice site

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Transcriptional regulation and the role of diverse coactivators in animal cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Dynamic regulation of pol II transcription by the mammalian Mediator complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Orchestrated response: a symphony of transcription factors for gene control

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

The multicoloured world of promoter recognition complexes.

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M611126200

The RNA polymerase II core promoter: a key component in the regulation of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Transcription elongation factors repress transcription initiation from cryptic sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

The yeast FACT complex has a role in transcriptional initiation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

A role for chromatin remodeling in transcriptional termination by RNA polymerase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

From transcription to mRNA: PAF provides a new path.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Integrating mRNA processing with transcription

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M611126200

Stimulatory effect of splicing factors on transcriptional elongation

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M611126200

RNA polymerase II C-terminal domain mediates regulation of alternative splicing by SRp20.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

A structural perspective of CTD function

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M611126200

Functional association between promoter structure and transcript alternative splicing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

CoAA, a nuclear receptor coactivator protein at the interface of transcriptional coactivation and RNA splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

The transcription factor Spi-1/PU.1 interacts with the potential splicing factor TLS

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

WT1 interacts with the splicing factor U2AF65 in an isoform-dependent manner and can be incorporated into spliceosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Steroid hormone receptor coactivation and alternative RNA splicing by U2AF65-related proteins CAPERalpha and CAPERbeta

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Connections between mRNA 3' end processing and transcription termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Strange bedfellows: polyadenylation factors at the promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

p54(nrb) associates with the 5' splice site within large transcription/splicing complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Predictive identification of exonic splicing enhancers in human genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

A novel protein factor is required for use of distal alternative 5' splice sites in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Mutations in U6 snRNA that alter splice site specificity: implications for the active site

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

A very strong enhancer is located upstream of an immediate early gene of human cytomegalovirus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

The initiation accuracy of the SV40 early transcription is determined by the functional domains of two TATA elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Coupling of transcription with alternative splicing: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an exonic splicing enhancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Specificity of RNA maturation pathways: RNAs transcribed by RNA polymerase III are not substrates for splicing or polyadenylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Promoter usage and alternative splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Human TAFII 105 is a cell type-specific TFIID subunit related to hTAFII130.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Diversified transcription initiation complexes expand promoter selectivity and tissue-specific gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Splicing factors associate with hyperphosphorylated RNA polymerase II in the absence of pre-mRNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Newly Initiated RNA encounters a factor involved in splicing immediately upon emerging from within RNA polymerase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Identification and characterization of Elf1, a conserved transcription elongation factor in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Recruitment of P-TEFb for stimulation of transcriptional elongation by the bromodomain protein Brd4

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

The adenine-thymine domain of the simian virus 40 core origin directs DNA bending and coordinately regulates DNA replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

New core promoter element in RNA polymerase II-dependent transcription: sequence-specific DNA binding by transcription factor IIB

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

RAP74 induces promoter contacts by RNA polymerase II upstream and downstream of a DNA bend centered on the TATA box.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Trajectory of DNA in the RNA polymerase II transcription preinitiation complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Synthetic enhancement of a TFIIB defect by a mutation in SSU72, an essential yeast gene encoding a novel protein that affects transcription start site selection in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

The transcriptional coactivator PC4/Sub1 has multiple functions in RNA polymerase II transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Functional interactions between the transcription and mRNA 3′ end processing machineries mediated by Ssu72 and Sub1

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

A role for SSU72 in balancing RNA polymerase II transcription elongation and termination

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Ssu72 Is an RNA polymerase II CTD phosphatase

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

Effects of RNA secondary structure on alternative splicing of Pre-mRNA: Is folding limited to a region behind the transcribing RNA polymerase?

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M611126200

21 January 2018

Identifiers

DOI

10.1074/JBC.M611126200

1 reference

18 September 2017

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