Mechanistic aspects of promoter binding and chain initiation by RNA polymerase (Q40247557)

18 September 2017

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title

Mechanistic aspects of promoter binding and chain initiation by RNA polymerase (English)

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18 September 2017

C W Wu

1

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18 September 2017

N Tweedy

series ordinal

2

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18 September 2017

publication date

1 September 1982

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Molecular and Cellular Biochemistry

18 September 2017

published in

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18 September 2017

volume

47

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18 September 2017

issue

3

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18 September 2017

page(s)

129-149

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Rifampicin binding as a probe for subunit interactions in Escherchia coli RNA polymerase

18 September 2017

cites work

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Initiation of transcription in vitro is inhibited by lipiarmycin

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Affinity labeling of the 3'-hydroxy terminal binding site of the ribonucleic acid chain on deoxyribonucleic acid dependent ribonucleic acid polymerase from Escherichia coli

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

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Protein . Nucleic-Acid Reaction Kinetics. Theoretical Analysis of the Binding Reaction between DNA and RNA Polymerase

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Inhibition of RNA Polymerase by Streptolydigin

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Studies of nucleotide binding to the ribonucleic acid polymerase by a fluorescence technique

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12 December 2020

Binding of Escherichia coli ribonucleic acid polymerase holoenzyme to a bacteriophage T7 promoter-containing fragment: evaluation of promoter binding constants as a function of solution conditions

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The Stereochemical Basis of Template Function

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Lipiarmycin, a new antibiotic from Actinoplanes. II. Isolation, chemical, biological and biochemical characterization.

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Release of the sigma subunit of Pseudomonas putida deoxyribonucleic acid dependent ribonucleic acid polymerase

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Kinetic investigation of the mechanism of RNA polymerase binding to mutant lac promoters.

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12 December 2020

Binding of Escherichia coli ribonucleic acid polymerase holoenzyme to a bacteriophage T7 promoter-containing fragment: selectivity exists over a wide range of solution conditions

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Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter

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Subunit localizations of zinc(II) in DNA-dependent RNA polymerase from Escherichia coli B

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Reconstitution of bacterial DNA-dependent RNA-polymerase from isolated subunits as a tool for the elucidation of the role of the subunits in transcription

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RNA polymerase—promoter interactions: Some general principles

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Initiation by the DNA-dependent RNA polymerase

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Mechanistic studies on deoxyribonucleic acid dependent ribonucleic acid polymerase from Escherichia coli using phosphorothioate analogs. 2. The elongation reaction

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DNA-dependent single-step addition reactions catalyzed by Escherichia coli RNA polymerase

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ENZYMATIC SYNTHESIS OF RIBONUCLEIC ACID. III. THE RIBONUCLEIC ACID-PRIMED SYNTHESIS OF RIBONUCLEIC ACID WITH MICROCOCCUS LYSODEIKTICUS RIBONUCLEIC ACID POLYMERASE

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Contacts between Escherichia coli RNA polymerase and an early promoter of phage T7.

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12 December 2020

Rate-limiting steps in RNA chain initiation

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12 December 2020

The role of deoxyribonucleic acid in ribonucleic acid synthesis. XIV. A study of the initiation of ribonucleic acid synthesis

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Defective assembly of ribonucleic acid polymerase subunits in a temperature-sensitive alpha-subunit mutant of Escherichia coli

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12 December 2020

Electron Microscopy Analysis of the Interaction between Escherichia coli DNA-Dependent RNA Polymerase and the Replicative Form of Phage fd DNA. 2. Analysis of the Dissociation Kinetics

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12 December 2020

Studies of ribonucleic acid chain initiation by Escherichia coli ribonucleic acid polymerase bound to T7 deoxyribonucleic acid. 3. The effect of temperature on ribonucleic acid chain initiation and on the conformation of binary complexes.

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12 December 2020

Incorporation of purine nucleoside 5'-[γ-S]triphosphates as affinity probes for initiation of RNA synthesis in vitro

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12 December 2020

Electron microscopic mapping of RNA polymerase binding to coliphage lambda DNA

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12 December 2020

Termination Factor for RNA Synthesis

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Affinity labeling of Escherichia coli DNA-dependent RNA polymerase with 5-formyl-l-(alpha-D-ribofuranosyl)uracil 5'-triphosphate

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Nonspecific interactions of Escherichia coli RNA polymerase with native and denatured DNA: differences in the binding behavior of core and holoenzyme

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Association kinetics with coupled diffusion III. Ionic-strength dependence of the lac repressor-operator association

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12 December 2020

Studies of RNA chain initiation by Escherichia coli RNA polymerase bound to T7 DNA. Direct analysis of the kinetics of RNA chain initiation at T7 promoter A2

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12 December 2020

On the probability of ring closure of lambda DNA

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12 December 2020

Transcription of the early region of bacteriophage T7: selective initiation with dinucleotides

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RNA polymerase unwinds an 11-base pair segment of a phage T7 promoter

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12 December 2020

Fluorescent affinity labeling of initiation site on ribonucleic acid polymerase of Escherichia coli.

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12 December 2020

DNA strand specificity in promoter recognition by RNA polymerase

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12 December 2020

Role of the sigma subunit of Escherichia coli RNA polymerase in initiation. I. Characterization of core enzyme open complexes

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12 December 2020

On the fidelity of transcription by Escherichia coli ribonucleic acid polymerase

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12 December 2020

Ribonucleic acid polymerase reactions with methylated polycytidylic acid templates.

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12 December 2020

Role of ribonucleic acid polymerase in gene selection in procaryotes

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12 December 2020

On the mechanism of streptolydigin inhibition of Escherichia coli RNA polymerase

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12 December 2020

Mechanism of ribonucleic acid chain initiation. 1. A non-steady-state study of ribonucleic acid synthesis without enzyme turnover

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12 December 2020

Azotobacter vinelandii ribonucleic acid polymerase. 8. Pyrophosphate exchange

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12 December 2020

Localization of Escherichia coli RNA polymerase binding sites on bacteriophage S13 and 0X174 DNAs by electron microscopy

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12 December 2020

Studies of the binding of Escherichia coli RNA polymerase to DNA. II. The kinetics of the binding reaction

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12 December 2020

Studies of the binding of Escherichia coli RNA polymerase to DNA. IV. The effect of rifampicin on binding and on RNA chain initiation.

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12 December 2020

Molecular mechanism of the rifampicin -RNA polymerase interaction

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12 December 2020

Diffusion controlled reaction rates in spheroidal geometry. Application to repressor--operator association and membrane bound enzymes

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12 December 2020

E. coli sigma factor: a positive control element in phage T4 development

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12 December 2020

Studies of the topography of the binding site of DNA-dependent RNA polymerase from Escherichia coli for the antibiotic rifamycin SV.

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12 December 2020

Mechanism of ribonucleic acid chain initiation. Molecular pulse-labeling study of ribonucleic acid syntheses on T7 deoxyribonucleic acid template

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12 December 2020

Role of the sigma subunit of Escherichia coli RNA polymerase in initiation. II. Release of sigma from ternary complexes

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12 December 2020

Physicochemical studies on interactions between DNA and RNA polymerase. Ultraviolet absorption measurements

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12 December 2020

Effects of cations on DNA-dependent RNA polymerase

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12 December 2020

Digestion with Matrix-Bound Proteases as a Possible Probe for the Topography of the DNA-Dependent RNA Polymerase from Escherichia coli

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12 December 2020

Subunit topography of RNA polymerase from Escherichia coli. A cross-linking study with bifunctional reagents

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12 December 2020

Utilization of promoter and terminator sites on bacteriophage T7 DNA by RNA polymerases from a variety of bacterial orders

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12 December 2020

Interaction of RNA polymerase from Escherichia coli with DNA. Effect of temperature and ionic strength on selection of T7 DNA early promoters

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12 December 2020

Iniatiation of RNA chains by RNA polymerase in vitro

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12 December 2020

Covalent attachment of ribonucleotides at 3'-hydroxyl ends of deoxyribonucleic acid catalyzed by deoxyribonucleic acid-dependent ribonucleic acid polymerase of Escherichia coli.

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12 December 2020

Mapping and characterization of promoters in bacteriophages fd, f1 and M13

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12 December 2020

2'-O-Methyladenosine 5'-triphosphate. Substrate for deoxyribonucleic acid dependent ribonucleic acid polymerase of Pseudomonas putida

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12 December 2020

Interaction of RNA Polymerase with Promoters from Bacteriophage fd

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12 December 2020

Specificity of sigma-dependent binding of RNA polymerase to DNA

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12 December 2020

Conformational transition of Escherichia coli RNA polymerase induced by the interaction of sigma subunit with core enzyme

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12 December 2020

Studies of ribonucleic acid chain initiation by Escherichia coli ribonucleic acid polymerase bound to T7 deoxyribonucleic acid. I. An assay for the rate and extent of ribonucleic acid chain initiation.

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12 December 2020

Magnetic resonance studies of the conformation of enzyme-bound adenylyl(3' → 5')uridine and adenosine 5'-triphosphate on RNA polymerase from Escherichia coli

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12 December 2020

Transcription of T7 DNA containing modified nucleotides by bacteriophage T7 specific RNA polymerase

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12 December 2020

A cold-sensitive β subunit mutant RNA polymerase from Escherichia coli with defects in promoter opening in vitro

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12 December 2020

Electron microscopic studies of the binding of Escherichia coli RNA polymerase to DNA. I. Characterization of the non-specific interactions of holoenzyme with a restriction fragment of bacteriophage T7 DNA

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12 December 2020

The role of DNA in RNA synthesis, IX. Nucleoside triphosphate termini in RNA polymerase products

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12 December 2020

A noncycling activity assay for the omega subunit of Escherichia coli RNA polymerase

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12 December 2020

Transcription of Azotobacter phage deoxyribonucleic acid. Salt-dependent equilibrium between steps in initiation

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12 December 2020

Studies on the binding of RNA polymerase to polynucleotides

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12 December 2020

Purification and properties of the .sigma. subunit of Escherichia coli DNA-dependent RNA polymerase

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12 December 2020

The presence and possible role of zinc in RNA polymerase obtained from Escherichia coli

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12 December 2020

Subunits of RNA polymerase in function and structure. II. Reconstitution of Escherichia coli RNA polymerase from isolated subunits

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12 December 2020

Characterization of ribonucleic acid polymerase-T7 promoter binary complexes

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12 December 2020

Spatial relationship of the sigma subunit and the rifampicin binding site in RNA polymerase of Escherichia coli

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12 December 2020

Studies of nucleotide binding to the ribonucleic acid polymerase by equilibrium dialysis

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12 December 2020

Mechanistic studies on deoxyribonucleic acid dependent ribonucleic acid polymerase from Escherichia coli using phosphorothioate analog. 1. Initiation and pyrophosphate exchange reactions

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12 December 2020

On the mechanism of rifampicin inhibition of RNA synthesis

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12 December 2020

Characterization of promoter containing DNA fragments based on the abortive initiation reaction of Escherichia coli RNA polymerase

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12 December 2020

Kinetic analysis of ribonucleic acid chain initiation by Escherichia coli Ribonucleic acid polymerase bound to DNA

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12 December 2020

Ribonucleic acid chain elongation by Escherichia coli ribonucleic acid polymerase. I. Isolation of ternary complexes and the kinetics of elongation.

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12 December 2020

The binding of RNA polymerase to DNA. Stabilization by nucleoside triphosphates

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12 December 2020

Electron microscope studies of transient complexes formed between Escherichia coli RNA polymerase holoenzyme and T7 DNA

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12 December 2020

Photochemical cross-linking studies on the interaction of Escherichia coli RNA polymerase with T7 DNA

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12 December 2020

Cyclic Re-use of the RNA Polymerase Sigma Factor

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12 December 2020

The Selectivity of Transcription

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12 December 2020

Mechanism of ribonucleic acid chain initiation. 2. A real time analysis of initiation by the rapid kinetic technique

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12 December 2020

In vitro analysis of the Escherichia coli RNA polymerase interaction with wild-type and mutant lactose promoters

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12 December 2020

Single RNA Polymerase Binding Site Isolated

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12 December 2020

A steady state assay for the RNA polymerase initiation reaction

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12 December 2020

A kinetic model for interaction of regulatory proteins and RNA Polymerase with the control region of the lac operon of Escherichia coli

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12 December 2020

Studies of the binding of Escherichia coli RNA polymerase to DNA. 3. Tight binding of RNA polymerase holoenzyme to single-strand breaks in T7 DNA.

1 reference

12 December 2020

Gallin (9-(2'-carboxyphenyl)-3,4,5,6-tetrahydroxyxanthene), a new inhibitor of Escherichia coli ribonucleic acid polymerase

1 reference

12 December 2020

Properties of ATP and UTP Analogues with P-S-C5' Bonds

1 reference

12 December 2020

Studies of RNA chain initiation by Escherichia coli RNA polymerase bound to T7 DNA. Direct analysis of the kinetics and extent of RNA chain initiation at T7 promoter A1

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12 December 2020

Interaction of E. coli RNA polymerase with promotors of coliphage T5: the rates of complex formation and decay and their correlation with in vitro and in vivo transcriptional activity

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12 December 2020

Role of the intrinsic metal in RNA polymerase from Escherichia coli. In vivo substitution of tightly bound zinc with cobalt

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12 December 2020

Subunit composition of Escherichia coli RNA polymerase during transcription in vitro

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12 December 2020

DNA-ethidium reaction kinetics: demonstration of direct ligand transfer between DNA binding sites

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12 December 2020

Subunits of RNA polymerase in function and structure; Maturation in vitro of core enzyme from Escherichia coli.

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12 December 2020

DNA binding of the lac repressor

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12 December 2020

In vitro comparison of initiation properties of bacteriophage lambda wild-type PR and x3 mutant promoters

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12 December 2020

RNA Polymerase of Escherichia coli

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12 December 2020

Error Frequency during in vitro Transcription of Poly U is increased with γ-Irradiated RNA Polymerase

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12 December 2020

Rose bengal. Inhibitor of ribonucleic acid chain elongation

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12 December 2020

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

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12 December 2020

Bacteriophage T7 early promoters: nucleotide sequences of two RNA polymerase binding sites

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12 December 2020

Affinity labeling of Escherichia coli B deoxyribonucleic acid dependent ribonucleic acid polymerase

1 reference

12 December 2020

STUDIES OF THE RIBONUCLEIC ACID POLYMERASE FROM ESCHERICHIA COLI. 3. STUDIES WITH SYNTHETIC POLYRIBONUCLEOTIDES AS TEMPLATES

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12 December 2020

Initiation of DNA-dependent RNA synthesis and the effect of heparin on RNA polymerase

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12 December 2020

Ribonucleic acid polymerase. II. Kinetic aspects of initiation and polymerization

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12 December 2020

Angular Alteration of the DNA Helix by E. coli RNA Polymerase

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12 December 2020

Polyribonucleotides Containing a Phosphorothioate Backbone

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12 December 2020

Separation and Characterization of the Subunits of Ribonucleic Acid Polymerase

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12 December 2020

Subunit location of the intrinsic divalent metal ions in RNA polymerase from Escherichia coli

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12 December 2020

Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli lac repressor-operator interaction: equilibrium measurements

1 reference

12 December 2020

Inhibition of RNA polymerase by streptolydigin

1 reference

12 December 2020

The kinetics and processivity of nucleic acid polymerases

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12 December 2020

Kinetics of the in vitro inhibition of transcription by actinomycin

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12 December 2020

Studies of the binding of Escherichia coli RNA polymerase to DNA. V. T7 RNA chain initiation by enzyme-DNA complexes

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12 December 2020

Nucleotide sequence determination of a strong promoter of the colicin E 1 plasmid. Analysis of restriction sites protected by RNA polymerase interactions before and after limited transcription

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12 December 2020

Magnetic resonance and kinetic studies of the role of the divalent cation activator of RNA polymerase from Escherichia coli

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12 December 2020

Determination of nucleotide sequences at promoter regions by the use of dinucleotides

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12 December 2020

Rose bengal. Spectroscopic probe for ribonucleic acid polymerase

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12 December 2020

Steady state kinetic studies of initiation of RNA synthesis on T7 DNA in the presence of rifampicin

1 reference

12 December 2020

The role of deoxyribonucleic acid in ribonucleic acid synthesis. I. The purification and properties of ribonucleic acid polymerase

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12 December 2020

The role of deoxyribonucleic acid in ribonucleic acid synthesis. 13. Modified purification procedure and additional properties of ribonucleic acid polymerase from Escherichia coli W

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12 December 2020

Magnetic resonance and kinetic studies of initiator-substrate distances on RNA polymerase from Escherichia coli

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12 December 2020

Influence of Temperature on the Action of Rifampicin on RNA Polymerase in Presence of DNA

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12 December 2020

Primed abortive initiation of RNA synthesis by E. coli RNA polymerase on T7 DNA. Steady state kinetic studies

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12 December 2020

Analysis of ion concentration effects of the kinetics of protein-nucleic acid interactions. Application to lac repressor-operator interactions

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12 December 2020

Association kinetics with coupled diffusional flows. Special application to the lac repressor--operator system.

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12 December 2020

Recognition Mechanisms of DNA-Specific Enzymes

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12 December 2020

MECHANISM OF RNA POLYMERASE ACTION: CHARACTERIZATION OF THE DNA-DEPENDENT SYNTHESIS OF POLYADENYLIC ACID

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12 December 2020

A new method for sequencing DNA

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12 December 2020

Selectivity of RNA chain initiation in vitro. 1. Analysis of RNA initiations by two-dimensional thin-layer chromatography of 5'-triphosphate-labeled oligonucleotides

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12 December 2020

Rifamycins: an insight into biological activity based on structural investigations

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12 December 2020

The effect of low substrate concentrations on the extent of productive RNA chain initiation from T7 promoters A1 and A2 by Escherichia coli RNA polymerase

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12 December 2020

Conformational properties of polyformycin: a polyribonucleotide with individual residues in the syn conformation

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12 December 2020

Association kinetics with coupled diffusion. An extension to coiled-chain macromolecules applied to the LAC repressor-operator system

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12 December 2020

Studies of the binding of Escherichia coli RNA polymerase to DNA. I. The role of sigma subunit in site selection.

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12 December 2020

The nature of initiation sites on DNA for the core RNA polymerase

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12 December 2020

Nucleotide sequence from the genetic left end of bacteriophage T7 DNA to the beginning of gene 4

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12 December 2020

Mode of action of rifamycin on the RNA polymerase reaction

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12 December 2020

Studies of ribonucleic acid chain initiation by Escherichia coli ribonucleic acid polymerase bound to T7 deoxyribonucleic acid. II. The effect of alterations in ionic strength of chain initiation and on the conformation of binary complexes

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12 December 2020

Determination of the Rate of Hexokinase-Glucose Dissociation by the Isotope-trapping Method

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12 December 2020

The molecular topography of rna polymerase-promoter interaction

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12 December 2020

ENZYMATIC SYNTHESIS OF RIBONUCLEIC ACID. II. PROPERTIES OF THE DEOXYRIBONUCLEIC ACID-PRIMED REACTION WITH MICROCOCCUS LYSODEIKTICUS RIBONUCLEIC ACID POLYMERASE

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12 December 2020

The lac repressor-operator interaction. 3. Kinetic studies

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12 December 2020

Termination of transcription by Escherichia coli ribonucleic acid polymerase in vitro. Effect of altered reaction conditions and mutations in the enzyme protein on termination with T7 and T3 deoxyribonucleic acids.

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12 December 2020

A rifampicin resistent rna-polymerase from E. coli altered in the beta-subunit

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12 December 2020

Isolation and characterization of streptolydigin resistant RNA polymerase

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12 December 2020

An expanded transcriptional map of T7 bacteriophage. Reading of minor T7 promoter sites in vitro by Escherichia coli RNA polymerase

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12 December 2020

Electron microscopic studies of the binding of Escherichia coli RNA polymerase to DNA. II. Formation of multiple promoter-like complexes at non-promoter sites.

1 reference

12 December 2020

Lipiarmycin, a new antibiotic from Actinoplanes. II. Isolation, chemical, bilogical and biochemical characterization.

1 reference

12 April 2024

https://opencitations.net/index/api/v1/citations/10.7164/ANTIBIOTICS.28.253

Identifiers

DOI

10.1007/BF00229597

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18 September 2017

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