Reaction conditions affect the specificity of bromoacetaldehyde as a probe for DNA cruciforms and B-Z junctions (Q40390109)

20 September 2017

Reaction conditions affect the specificity of bromoacetaldehyde as a probe for DNA cruciforms and B-Z junctions (English)

1 reference

20 September 2017

M J McLean

1

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20 September 2017

J E Larson

series ordinal

2

1 reference

20 September 2017

F Wohlrab

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3

1 reference

20 September 2017

R D Wells

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4

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20 September 2017

language of work or name

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1 September 1987

1 reference

20 September 2017

Nucleic Acids Research

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20 September 2017

15

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20 September 2017

17

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20 September 2017

6917-6935

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High-salt d(CpGpCpG), a left-handed Z' DNA double helix

20 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

The three-dimensional structure of DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

The sequence (dC-dA)n X (dG-dT)n forms left-handed Z-DNA in negatively supercoiled plasmids

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Detection of an altered DNA conformation at specific sites in chromatin and supercoiled DNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

BAL 31 nuclease as a probe in concentrated salt for the B-Z DNA junction

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Structural perturbation in supercoiled DNA: hypersensitivity to modification by a single-strand-selective chemical reagent conferred by inverted repeat sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Conformational flexibility of junctions between contiguous B- and Z-DNAs in supercoiled plasmids

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

The inverted repeat as a recognizable structural feature in supercoiled DNA molecules

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

57 Sequencing end-labeled DNA with base-specific chemical cleavages

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Human U1 RNA genes contain an unusually sensitive nuclease S1 cleavage site within the conserved 3' flanking region

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Possible structures of homopurine-homopyrimidine S1-hypersensitive sites

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Salt-induced co-operative conformational change of a synthetic DNA: Equilibrium and kinetic studies with poly(dG-dC)

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Transition of a cloned d(AT)n-d(AT)n tract to a cruciform in vivo.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

A left-handed (Z) conformation of poly(dA-dC).poly(dG-dT) induced by polyamines

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Unusual conformational effect exerted by Z-DNA upon its neighboring sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Consecutive A X T pairs can adopt a left-handed DNA structure

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Eukaryotic DNA diverges at a long and complex pyrimidine.purine tract that can adopt altered conformations.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Molecular structure of a left-handed double helical DNA fragment at atomic resolution

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Poly(dG)-poly(dC) sequences, under torsional stress, induce an altered DNA conformation upon neighboring DNA sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Chemical probes of DNA conformation: detection of Z-DNA at nucleotide resolution.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

The segment inversion site of herpes simplex virus type 1 adopts a novel DNA structure

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Structure of RNA polymerase II promoters. Conformational alterations and template properties of circularized Saccharomyces cerevisiae GAL1-GAL10 divergent promoters.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Site-specific OsO4 modification of the B-Z junctions formed at the (dA-dC)32 region in supercoiled DNA.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Analysis of the adult chicken beta-globin gene. Nucleotide sequence of the locus, microheterogeneity at the 5'-end of beta-globin mRNA, and aberrant nuclear RNA species.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

DNA conformation at the 5′ end of the chicken adult β-globin gene

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Conformation of promoter DNA: Fine mapping of S1-hypersensitive sites

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=306184

Fluorometric assay of adenine and its derivatives

20 August 2018

1 reference

12 December 2020

Left-handed DNA in restriction fragments and a recombinant plasmid

1 reference

12 December 2020

Conditions which cause the right-handed to left-handed DNA conformational transitions. Evidence for several types of left-handed DNA structures in solution

1 reference

12 December 2020

Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions

1 reference

12 December 2020

The facile generation of covalently closed, circular DNAs with defined negative superhelical densities

1 reference

12 December 2020

Chloroacetaldehyde-treated ribo- and deoxyribopolynucleotides. 1. Reaction products

1 reference

12 December 2020

Facile transition of poly[d(TG)·d(CA)] into a left-handed helix in physiological conditions

1 reference

12 December 2020

Effects of salts, temperature, and stem length on supercoil-induced formation of cruciforms

1 reference

12 December 2020

Effects of 5 cytosine methylation on the B-Z transition in DNA restriction fragments and recombinant plasmids

1 reference

12 December 2020

S1 nuclease recognizes DNA conformational junctions between left-handed helical (dT-dG n. dC-dA)n and contiguous right-handed sequences

1 reference

12 December 2020

A sequence conserved in both the chicken and mouse alpha 2(I) collagen promoter contains sites sensitive to S1 nuclease

1 reference

12 December 2020

Intervening sequences in human fetal globin genes adopt left-handed Z helices

1 reference

12 December 2020

Transcriptional block caused by a negative supercoiling induced structural change in an alternating CG sequence

1 reference

12 December 2020

B-Z DNA junctions contain few, if any, nonpaired bases at physiological superhelical densities

1 reference

12 December 2020

Unusual DNA structures in the adenovirus genome

1 reference

12 December 2020

Recognition of the structural distortions at the junctions between B and Z segments in negatively supercoiled DNA by osmium tetroxide

1 reference

12 December 2020

Fluorescent adenosine and cytidine derivatives

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/15.17.6917

1 reference

20 September 2017

1 reference

20 September 2017

PubMed publication ID

2821485

1 reference