The helicase-like domains of type III restriction enzymes trigger long-range diffusion along DNA (Q40462523)

20 September 2017

The helicase-like domains of type III restriction enzymes trigger long-range diffusion along DNA (English)

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20 September 2017

6

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20 September 2017

Friedrich W Schwarz

1

1 reference

20 September 2017

Júlia Tóth

2

1 reference

20 September 2017

Kara van Aelst

3

1 reference

20 September 2017

Guanshen Cui

4

1 reference

20 September 2017

Sylvia Clausing

5

1 reference

20 September 2017

Ralf Seidel

7

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20 September 2017

language of work or name

English

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publication date

1 April 2013

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20 September 2017

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20 September 2017

340

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20 September 2017

6130

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20 September 2017

353-356

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Single-molecule imaging reveals target-search mechanisms during DNA mismatch repair

20 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

ATP alters the diffusion mechanics of MutS on mismatched DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Structural insights into the assembly and shape of Type III restriction-modification (R-M) EcoP15I complex by small-angle X-ray scattering.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Large conformational changes in MutS during DNA scanning, mismatch recognition and repair signalling

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Mechanistic insights into type III restriction enzymes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

How a DNA Polymerase Clamp Loader Opens a Sliding Clamp

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

DNA cleavage site selection by Type III restriction enzymes provides evidence for head-on protein collisions following 1D bidirectional motion.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

PcrA helicase dismantles RecA filaments by reeling in DNA in uniform steps

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Type III restriction enzymes cleave DNA by long-range interaction between sites in both head-to-head and tail-to-tail inverted repeat

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Nonspecifically bound proteins spin while diffusing along DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

An end to 40 years of mistakes in DNA-protein association kinetics?

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Type III restriction enzymes communicate in 1D without looping between their target sites

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Structure and mechanism of helicases and nucleic acid translocases

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Development of fluorescent biosensors for probing the function of motor proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

DNA translocation and loop formation mechanism of chromatin remodeling by SWI/SNF and RSC.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

When a helicase is not a helicase: dsDNA tracking by the motor protein EcoR124I.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Continuous assays for DNA translocation using fluorescent triplex dissociation: application to type I restriction endonucleases.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Nucleoside triphosphate-dependent restriction enzymes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Tracking single particles and elongated filaments with nanometer precision

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

DNA looping and translocation provide an optimal cleavage mechanism for the type III restriction enzymes

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Dissociation from DNA of Type III Restriction-Modification enzymes during helicase-dependent motion and following endonuclease activity

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

Type III restriction enzymes need two inversely oriented recognition sites for DNA cleavage

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3646237

DNA communications by Type III restriction endonucleases--confirmation of 1D translocation over 3D looping

20 August 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Efficient preparation of internally modified single-molecule constructs using nicking enzymes

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Fast dynamics of supercoiled DNA revealed by single-molecule experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon, the EcoP15 mod gene and some EcoP1 mod mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Type III restriction endonuclease EcoP15I is a heterotrimeric complex containing one Res subunit with several DNA-binding regions and ATPase activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Biotinylation of proteins in vivo: a useful posttranslational modification for protein analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

NIH Image to ImageJ: 25 years of image analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Motor step size and ATP coupling efficiency of the dsDNA translocase EcoR124I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Long-distance lateral diffusion of human Rad51 on double-stranded DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Tumor suppressor p53 slides on DNA with low friction and high stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Sliding and jumping of single EcoRV restriction enzymes on non-cognate DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

The one-dimensional diffusion coefficient of proteins absorbed on DNA. Hydrodynamic considerations

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

The rotation-coupled sliding of EcoRV

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Proliferating cell nuclear antigen uses two distinct modes to move along DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

A single-molecule characterization of p53 search on DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Dynamic basis for one-dimensional DNA scanning by the mismatch repair complex Msh2-Msh6.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

MutS switches between two fundamentally distinct clamps during mismatch repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

d(GATC) sequences influence Escherichia coli mismatch repair in a distance-dependent manner from positions both upstream and downstream of the mismatch

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Spring-loaded mechanism of DNA unwinding by hepatitis C virus NS3 helicase

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Real-time observation of DNA translocation by the type I restriction modification enzyme EcoR124I.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1231122

Scanning evanescent fields using a pointlike light source and a nanomechanical DNA gear

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23599494

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.1231122

1 reference

20 September 2017

0 references

1 reference

20 September 2017

PubMed publication ID

23599494

1 reference