DeoR repression at-a-distance only weakly responds to changes in interoperator separation and DNA topology (Q40534883)

21 September 2017

DeoR repression at-a-distance only weakly responds to changes in interoperator separation and DNA topology (English)

1 reference

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26 September 2022

1 reference

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Escherichia coli proteins

26 September 2022

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1437558

nucleic acid tertiary structure

26 September 2022

1 reference

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26 September 2022

author name string

G. Dandanell

series ordinal

1

1 reference

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26 September 2022

language of work or name

1 reference

1 October 1992

1 reference

PMC publication ID

334349

21 September 2017

25 October 1992

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=1437558

full work available at URL

26 September 2022

https://europepmc.org/articles/PMC334349

1 reference

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https://europepmc.org/articles/PMC334349?pdf=render

26 September 2022

file format

Portable Document Format

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A1437558

26 September 2022

published in

Nucleic Acids Research

1 reference

21 September 2017

20

1 reference

21 September 2017

20

1 reference

21 September 2017

5407-5412

1 reference

Regulation of bacterial DNA supercoiling: plasmid linking numbers vary with growth temperature

21 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

Tandem CRP binding sites in the deo operon of Escherichia coli K-12

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

The locus of sequence-directed and protein-induced DNA bending

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

An improved positive selection plasmid vector constructed by oligonucleotide mediated mutagenesis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

DNA flexibility studied by covalent closure of short fragments into circles

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

An operator at -280 base pairs that is required for repression of araBAD operon promoter: addition of DNA helical turns between the operator and promoter cyclically hinders repression

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

A dimer of AraC protein contacts three adjacent major groove regions of the araI DNA site

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

The DNA loop model for ara repression: AraC protein occupies the proposed loop sites in vivo and repression-negative mutations lie in these same sites

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

lac repressor forms loops with linear DNA carrying two suitably spaced lac operators

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

Variations of intramolecular ligation rates allow the detection of protein-induced bends in DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

In vivo DNA loops in araCBAD: size limits and helical repeat

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

The three operators of the lac operon cooperate in repression

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

The CytR repressor antagonizes cyclic AMP-cyclic AMP receptor protein activation of the deoCp2 promoter of Escherichia coli K-12.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

Long-Distance deoR Regulation of Gene Expression in Escherichia coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

Construction, Isolation and Implications of Repressor-galactosidase . ss-galactosidase Hybrid Molecules

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

Purification and characterization of the deoR repressor of Escherichia coli.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

DNA supercoiling changes the spacing requirement of two lac operators for DNA loop formation with lac repressor.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

Two operator sites separated by 599 base pairs are required for deoR repression of the deo operon of Escherichia coli

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

Energetics of DNA twisting. I. Relation between twist and cyclization probability.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

A system to study promoter and terminator signals recognized by Escherichia coli RNA polymerase

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

Cooperative binding of lambda repressors to sites separated by integral turns of the DNA helix

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

DNA loops induced by cooperative binding of lambda repressor

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

Long-range cooperativity between gene regulatory sequences in a prokaryote.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

Binding of Escherichia coli RNA polymerase to a promoter carrying mutations that stop transcription initiation.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

Upstream operators enhance repression of the lac promoter

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

DNA-protein recognition: demonstration of three genetically separated operator elements that are required for repression of the Escherichia coli deoCABD promoters by the DeoR repressor.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

Physical properties of DNA in vivo as probed by the length dependence of the lac operator looping process

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=334349

deoP1 promoter and operator mutants in Escherichia coli: isolation and characterization

20 August 2018

1 reference

12 December 2020

Single and double loop formation when deoR repressor binds to its natural operator sites

1 reference

12 December 2020

Interaction at a distance between λrepressers disrupts gene activation

1 reference

12 December 2020

Specific destruction of the second lac operator decreases repression of the lac operon in Escherichia coli fivefold

1 reference

12 December 2020

Analysis of the ring-closure probabilities of isotropic wormlike chains: application to duplex DNA

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/20.20.5407

1 reference

21 September 2017

1 reference

PMC publication ID

334349

21 September 2017

1 reference

PMC publication ID

334349