Theoretical studies of protein folding and unfolding (Q40540915)

scientific article published on February 1995

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English	Theoretical studies of protein folding and unfolding	scientific article published on February 1995

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Europe PubMed Central

21 September 2017

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Europe PubMed Central

title

Theoretical studies of protein folding and unfolding (English)

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Europe PubMed Central

21 September 2017

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1

Karplus M

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Europe PubMed Central

21 September 2017

Sali A

2

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Europe PubMed Central

PubMed ID

7773748

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21 September 2017

language of work or name

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1 February 1995

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Europe PubMed Central

21 September 2017

Current Opinion in Structural Biology

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stated in

Europe PubMed Central

21 September 2017

5

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Europe PubMed Central

21 September 2017

1

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stated in

Europe PubMed Central

21 September 2017

58-73

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stated in

Europe PubMed Central

21 September 2017

Formation of a molten globule intermediate early in the kinetic folding pathway of apomyoglobin

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A protein-folding reaction under kinetic control

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Detection of transient protein folding populations by mass spectrometry

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Generalized protein tertiary structure recognition using associative memory Hamiltonians.

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The consistency principle in protein structure and pathways of folding

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Does compactness induce secondary structure in proteins? A study of poly-alanine chains computed by distance geometry

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Exhaustive conformational search and simulated annealing for models of lattice peptides.

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Local and nonlocal interactions in globular proteins and mechanisms of alcohol denaturation

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Laser photo-CIDNP as a surface probe for proteins in solution.

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Lattice model simulations of polypeptide chain folding

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Computer modeling and folding of four-helix bundles

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Protein folding bottlenecks: A lattice Monte Carlo simulation

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Computer simulation of protein folding

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Forces of tertiary structural organization in globular proteins

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Formation of unique structure in polypeptide chains. Theoretical investigation with the aid of a replica approach

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Simulations of the folding of a globular protein.

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Solvent-induced organization: a physical model of folding myoglobin

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Exploring conformational space with a simple lattice model for protein structure

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The nature of folded states of globular proteins

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Towards protein folding by global energy optimization

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Understanding how proteins fold: the lysozyme story so far.

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A protein dissection study of a molten globule

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Matching speed and stability

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Characterization of "native" apomyoglobin by molecular dynamics simulation

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Hydrogen bonding, hydrophobicity, packing, and protein folding

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11 October 2022

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Differential stability of beta-sheets and alpha-helices in beta-lactamase: a high temperature molecular dynamics study of unfolding intermediates

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11 October 2022

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Molecular dynamics simulations of helix denaturation

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Chemistry and biology of prions

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Detection of native-like models for amino acid sequences of unknown three-dimensional structure in a data base of known protein conformations

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Molecular dynamics simulations of the unfolding of apomyoglobin in water

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Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin

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Beta-sheet rearrangements: serpins and beyond

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Theory for the folding and stability of globular proteins

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Reduced representation model of protein structure prediction: statistical potential and genetic algorithms

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Specific nucleus as the transition state for protein folding: evidence from the lattice model.

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Dynamic Monte Carlo simulations of a new lattice model of globular protein folding, structure and dynamics

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Polymer principles in protein structure and stability.

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Extracting information on folding from the amino acid sequence: accurate predictions for protein regions with preferred conformation in the absence of tertiary interactions

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Residues in chaperonin GroEL required for polypeptide binding and release

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Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

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De novo and inverse folding predictions of protein structure and dynamics

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Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.

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Transient conformational states in proteins followed by differential labeling

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NMR and protein folding: equilibrium and stopped-flow studies

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A method for predicting protein structure from sequence.

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Protein unfolding pathways explored through molecular dynamics simulations

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A new approach to the design of stable proteins

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The barriers in protein folding

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Molecular dynamics simulations of the unfolding of an alpha-helical analogue of ribonuclease A S-peptide in water

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Side-chain entropy and packing in proteins

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An analysis of protein folding pathways

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Detailed ab initio prediction of lysozyme-antibody complex with 1.6 A accuracy.

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Unified theory of collapse, folding, and glass transitions in associative-memory Hamiltonian models of proteins.

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Modeling compact denatured states of proteins

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Characterization of the transition state of protein unfolding by use of molecular dynamics: chymotrypsin inhibitor 2

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Computational complexity of a problem in molecular structure prediction

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Intermediates in the folding reactions of small proteins

1 reference

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Prediction of the folding pathways and structure of the GCN4 leucine zipper

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Unfolding and refolding of the native structure of bovine pancreatic trypsin inhibitor studied by computer simulations.

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Sequence-structure relationships in proteins and copolymers

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The molten globule is a third thermodynamical state of protein molecules.

1 reference

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Unfolding of an ?-helix in water

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Urea denaturation of barnase: pH dependence and characterization of the unfolded state

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Implications of thermodynamics of protein folding for evolution of primary sequences

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Kinetics of protein folding. A lattice model study of the requirements for folding to the native state.

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Simulation of the thermal denaturation of hen egg white lysozyme: trapping the molten globule state

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Minimum energy compact structures of random sequences of heteropolymers

1 reference

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Toward protein tertiary structure recognition by means of associative memory hamiltonians.

1 reference

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Fast folding of a prototypic polypeptide: the immunoglobulin binding domain of streptococcal protein G.

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Protein folding dynamics: the diffusion-collision model and experimental data

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Prediction of protein folding pathways: Bovine pancreatic trypsin inhibitor.

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The sixth Datta Lecture. Protein folding and stability: the pathway of folding of barnase

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Protein folding: predicting predicting

1 reference

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Folding of chymotrypsin inhibitor 2. 2. Influence of proline isomerization on the folding kinetics and thermodynamic characterization of the transition state of folding

1 reference

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Proteins with selected sequences fold into unique native conformation

1 reference

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Jubilee Lecture. Pathway and stability of protein folding.

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A simplified amino acid potential for use in structure predictions of proteins.

1 reference

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Protein folding. Secrets of a double-doughnut.

1 reference

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Protein folding studied using hydrogen-exchange labeling and two-dimensional NMR

1 reference

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Folding and stability of a tryptophan-containing mutant of ubiquitin.

1 reference

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The crystal structure of the bacterial chaperonin GroEL at 2.8 A

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Finding the lowest free energy conformation of a protein is an NP-hard problem: proof and implications.

1 reference

11 October 2022

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A lattice statistical mechanics model of the conformational and sequence spaces of proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/0959-440X(95)80010-X

Complexity of protein folding.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/0959-440X(95)80010-X

Prediction of protein conformation on the basis of a search for compact structures: test on avian pancreatic polypeptide

1 reference

11 October 2022

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Folding protein alpha-carbon chains into compact forms by Monte Carlo methods

1 reference

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Bovine endothelial cell plasminogen activator inhibitor. Purification and heat activation

1 reference

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Molecular theory of associative memory Hamiltonian models of protein folding.

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/0959-440X(95)80010-X

Statistical mechanics of proteins with "evolutionary selected" sequences

1 reference

11 October 2022

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Boltzmann's principle, knowledge-based mean fields and protein folding. An approach to the computational determination of protein structures

1 reference

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https://opencitations.net/index/coci/api/v1/references/10.1016/0959-440X(95)80010-X

Properties and origins of protein secondary structure

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/0959-440X(95)80010-X

Prediction of protein folding pathways

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/0959-440X(95)80010-X

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DOI

10.1016/0959-440X(95)80010-X

1 reference

stated in

Europe PubMed Central

21 September 2017

1 reference

Europe PubMed Central

PubMed ID

7773748

retrieved

21 September 2017

Theoretical studies of protein folding and unfolding (Q40540915)

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Theoretical studies of protein folding and unfolding (Q40540915)

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