A physiological connection between tmRNA and peptidyl-tRNA hydrolase functions in Escherichia coli. (Q40605738)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15547251%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

title

A physiological connection between tmRNA and peptidyl-tRNA hydrolase functions in Escherichia coli (English)

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5 January 2020

1 reference

1

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5 January 2020

2

Umesh Varshney

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5 January 2020

publication date

16 November 2004

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5 January 2020

published in

Nucleic Acids Research

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5 January 2020

volume

32

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5 January 2020

issue

20

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5 January 2020

page(s)

6028-6037

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Ribosome stalling and peptidyl-tRNA drop-off during translational delay at AGA codons

5 January 2020

cites work

1 reference

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Dial tm for rescue: tmRNA engages ribosomes stalled on defective mRNAs

22 September 2017

1 reference

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Ribosome rescue by tmRNA requires truncated mRNAs

22 September 2017

1 reference

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Toxin-antitoxin loci as stress-response-elements: ChpAK/MazF and ChpBK cleave translated RNAs and are counteracted by tmRNA.

22 September 2017

1 reference

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A salvage pathway for protein structures: tmRNA and trans-translation

22 September 2017

1 reference

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Orthologs of a novel archaeal and of the bacterial peptidyl-tRNA hydrolase are nonessential in yeast

22 September 2017

1 reference

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The biological roles of trans-translation

22 September 2017

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Specific interaction between the ribosome recycling factor and the elongation factor G from Mycobacterium tuberculosis mediates peptidyl-tRNA release and ribosome recycling in Escherichia coli

22 September 2017

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A highly efficient Escherichia coli-based chromosome engineering system adapted for recombinogenic targeting and subcloning of BAC DNA

22 September 2017

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SsrA-mediated tagging and proteolysis of LacI and its role in the regulation of lac operon

22 September 2017

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The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue

22 September 2017

1 reference

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One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

22 September 2017

1 reference

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Charged tmRNA but not tmRNA-mediated proteolysis is essential for Neisseria gonorrhoeae viability

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Shutdown in protein synthesis due to the expression of mini-genes in bacteria.

22 September 2017

1 reference

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Analysis of the role of trans-translation in the requirement of tmRNA for lambdaimmP22 growth in Escherichia coli

22 September 2017

1 reference

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Initiation factors IF1 and IF2 synergistically remove peptidyl-tRNAs with short polypeptides from the P-site of translating Escherichia coli ribosomes

22 September 2017

1 reference

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Degradation of carboxy-terminal-tagged cytoplasmic proteins by the Escherichia coli protease HflB (FtsH)

22 September 2017

1 reference

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The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system

22 September 2017

1 reference

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Ribosome release factor RF4 and termination factor RF3 are involved in dissociation of peptidyl-tRNA from the ribosome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

The growth defect in Escherichia coli deficient in peptidyl-tRNA hydrolase is due to starvation for Lys-tRNA(Lys)

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Role for 10Sa RNA in the growth of lambda-P22 hybrid phage

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Gene disruption in Escherichia coli: TcR and KmR cassettes with the option of Flp-catalyzed excision of the antibiotic-resistance determinant

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Characterization of mutants of Escherichia coli temperature-sensitive for ribonucleic acid regulation: an unusual phenotype associated with a phenylalanyl transfer ribonucleic acid synthetase mutant

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Isolation of "relaxed" mutants of Escherichia coli

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Constraints on the accuracy of messenger RNA movement

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Identification and characterization of mutations in Escherichia coli that selectively influence the growth of hybrid lambda bacteriophages carrying the immunity region of bacteriophage P22.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Peptidyl-tRNA hydrolase is involved in lambda inhibition of host protein synthesis.

22 September 2017

1 reference

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Interaction between bacteriophage lambda and its Escherichia coli host

22 September 2017

1 reference

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Accumulation of peptidyl tRNA is lethal to Escherichia coli

22 September 2017

1 reference

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Synthesis and degradation of termination and premature-termination fragments of β-galactosidase in vitro and in vivo

22 September 2017

1 reference

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The accumulation as peptidyl-transfer RNA of isoaccepting transfer RNA families in Escherichia coli with temperature-sensitive peptidyl-transfer RNA hydrolase

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Tests of the ribosomal editing hypothesis: Amino acid starvation differentially enhances the dissociation of peptidyl-tRNA from the ribosome

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Peptidyl-tRNA hydrolase in Bacillus subtilis, encoded by spoVC, is essential to vegetative growth, whereas the homologous enzyme in Saccharomyces cerevisiae is dispensable

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

lambda bar minigene-mediated inhibition of protein synthesis involves accumulation of peptidyl-tRNA and starvation for tRNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Mutant E. coli Strain with Temperature Sensitive Peptidyltransfer RNA Hydrolase

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Phage genetic sites involved in lambda growth inhibition by the Escherichia coli rap mutant

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Processivity errors of gene expression in Escherichia coli.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Direct analysis of aminoacylation levels of tRNAs in vivo. Application to studying recognition of Escherichia coli initiator tRNA mutants by glutaminyl-tRNA synthetase

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Peptidyl transfer RNA dissociates during protein synthesis from ribosomes of Escherichia coli

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

RelE toxins from bacteria and Archaea cleave mRNAs on translating ribosomes, which are rescued by tmRNA.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Tests of the ribosome editor hypothesis. II. Relaxed (relA) and stringent (relA+) E. coli differ in rates of dissociation of peptidyl-tRNA from ribosomes

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Differential stringent control of the tandem E. coli ribosomal RNA promoters from the rrnA operon expressed in vivo in multicopy plasmids

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=534616

Reactions at the 3' terminus of transfer ribonucleic acid. II. Purification and physical and chemical properties of rabbit liver transfer ribonucleic acid nucleotidyltransferase

20 August 2018

1 reference

12 December 2020

A precursor for a small stable RNA (10Sa RNA) of Escherichia coli

1 reference

12 December 2020

The site of hydrolysis by rabbit reticulocyte peptidyl-tRNA hydrolase is the 3'-AMP terminus of susceptible tRNA substrates

1 reference

12 December 2020

Characterization of Mycobacterium tuberculosis ribosome recycling factor (RRF) and a mutant lacking six amino acids from the C-terminal end reveals that the C-terminal residues are important for its occupancy on the ribosome

1 reference

12 December 2020

The Bacterial Toxin RelE Displays Codon-Specific Cleavage of mRNAs in the Ribosomal A Site

1 reference

12 December 2020

Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control

1 reference

12 December 2020

Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli

1 reference

12 December 2020

Studies on polynucleotides. LXXXVI. Enzymic hydrolysis of N-acylaminoacyl-transfer RNA

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKH924

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15547251%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15547251%20AND%20SRC:MED&resulttype=core&format=json

5 January 2020

1 reference