An analysis of packing in the protein folding problem (Q40688036)

22 September 2017

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title

An analysis of packing in the protein folding problem (English)

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22 September 2017

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Richards FM

1

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22 September 2017

Lim WA

series ordinal

2

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22 September 2017

language of work or name

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1 November 1993

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Quarterly Reviews of Biophysics

22 September 2017

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22 September 2017

26

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22 September 2017

4

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22 September 2017

423-498

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Polymer principles in protein structure and stability.

22 September 2017

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Origins of structure in globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Ancestral lysozymes reconstructed, neutrality tested, and thermostability linked to hydrocarbon packing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Crystal structure of a synthetic triple-stranded alpha-helical bundle

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

The role of internal packing interactions in determining the structure and stability of a protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Extracting hydrophobic free energies from experimental data: relationship to protein folding and theoretical models

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Deciphering the message in protein sequences: tolerance to amino acid substitutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Aromatic-aromatic interactions and protein stability. Investigation by double-mutant cycles

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Identifying determinants of folding and activity for a protein of unknown structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Structure of alkaline metmyoglobin-xenon complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

The protein-folding problem: the native fold determines packing, but does packing determine the native fold?

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Temperature dependence of the hydrophobic interaction in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Prediction of protein side-chain conformation by packing optimization.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Protein states and proteinquakes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Accurate prediction of the stability and activity effects of site-directed mutagenesis on a protein core

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Estimation of the maximum change in stability of globular proteins upon mutation of a hydrophobic residue to another of smaller size

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Solvent reorganization contribution to the transfer thermodynamics of small nonpolar molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Linkage of thioredoxin stability to titration of ionizable groups with perturbed pKa.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

The conserved, buried aspartic acid in oxidized Escherichia coli thioredoxin has a pKa of 7.5. Its titration produces a related shift in global stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Genetic studies of the lac repressor. XIII. Extensive amino acid replacements generated by the use of natural and synthetic nonsense suppressors

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Refinement of the crystal structure of ribonuclease S. Comparison with and between the various ribonuclease A structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Hydrophobic packing in T4 lysozyme probed by cavity-filling mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Protein design by binary patterning of polar and nonpolar amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Conformation of amino acid side-chains in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

The hydrophobic core of Escherichia coli thioredoxin shows a high tolerance to nonconservative single amino acid substitutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Energetics of complementary side-chain packing in a protein hydrophobic core

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Yeast iso-1-cytochrome c: genetic analysis of structural requirements

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Protein folding. Effect of packing density on chain conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Repacking protein interiors

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Energetics of repacking a protein interior

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Influence of interior packing and hydrophobicity on the stability of a protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Hydrogen bonding, hydrophobicity, packing, and protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

A cavity-containing mutant of T4 lysozyme is stabilized by buried benzene

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Identification of structural motifs from protein coordinate data: secondary structure and first-level supersecondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Areas, volumes, packing and protein structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Systematic mutation of bacteriophage T4 lysozyme.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Accurate bond and angle parameters for X-ray protein structure refinement

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Structural effects induced by removal of a disulfide-bridge: the X-ray structure of the C30A/C51A mutant of basic pancreatic trypsin inhibitor at 1.6 A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Molecular engineering: An approach to the development of general capabilities for molecular manipulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Denatured states of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Functionally acceptable substitutions in two alpha-helical regions of lambda repressor.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

The meaning of hydrophobicity

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Combinatorial cassette mutagenesis as a probe of the informational content of protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Dominant forces in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Internal cavities and buried waters in globular proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Structural and thermodynamic consequences of burying a charged residue within the hydrophobic core of T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Structural and thermodynamic analysis of the packing of two alpha-helices in bacteriophage T4 lysozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Contribution of the hydrophobic effect to globular protein stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Crystallographic structures of ribonuclease S variants with nonpolar substitution at position 13: packing and cavities

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Mutagenic analysis of the interior packing of an alpha/beta barrel protein. Effects on the stabilities and rates of interconversion of the native and partially folded forms of the alpha subunit of tryptophan synthase

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Thermodynamics of protein-peptide interactions in the ribonuclease S system studied by titration calorimetry

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Protein-ligand dynamics. A 96 picosecond simulation of a myoglobin-xenon complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Cavities in proteins: structure of a metmyoglobin-xenon complex solved to 1.9 A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Stereochemical quality of protein structure coordinates

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Thermodynamics of protein-peptide interactions in the ribonuclease-S system studied by molecular dynamics and free energy calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

In a staphylococcal nuclease mutant the side-chain of a lysine replacing valine 66 is fully buried in the hydrophobic core

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Alternative packing arrangements in the hydrophobic core of λrepresser

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Thermodynamics of unfolding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Structural invariants in protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

Unnatural amino acid packing mutants of Escherichia coli thioredoxin produced by combined mutagenesis/chemical modification techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

Modeling the effects of mutations on the denatured states of proteins

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

Structural and energetic consequences of disruptive mutations in a protein core

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

https://api.crossref.org/works/10.1017%2FS0033583500002845

1 reference

7 January 2021

Structure of the lambda complex at 2.5 A resolution: details of the repressor-operator interactions

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

Analysis of the steric strain in the polypeptide backbone of protein molecules

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

On the environment of ionizable groups in globular proteins

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

Analysis of the relationship between side-chain conformation and secondary structure in globular proteins

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

Mutational studies of protein structures and their stabilities

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

The physical origin of the low solubility of nonpolar solutes in water

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

Determinants of a protein fold. Unique features of the globin amino acid sequences

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

Comparison of protein structures determined by NMR in solution and by X-ray diffraction in single crystals

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

Van der waals picture of liquids, solids, and phase transformations

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

The evolution of protein structures

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

Atomic size packing defects in proteins

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

Metal ion-dependent modulation of the dynamics of a designed protein

1 reference

https://api.crossref.org/works/10.1017%2FS0033583500002845

7 January 2021

10.1017/S0033583500002845

Identifiers

DOI

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release_jr2oip7j7vca7peysegt7fsguq

22 September 2017

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Fatcat

https://api.fatcat.wiki/v0/release/jr2oip7j7vca7peysegt7fsguq

24 November 2022

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