PKD1 intron 21: triplex DNA formation and effect on replication (Q40773134)

23 September 2017

PKD1 intron 21: triplex DNA formation and effect on replication (English)

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23 September 2017

Hiren P Patel

1

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23 September 2017

Lu Lu

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2

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23 September 2017

Richard T Blaszak

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3

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23 September 2017

John J Bissler

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4

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23 September 2017

27 February 2004

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23 September 2017

Nucleic Acids Research

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23 September 2017

32

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23 September 2017

4

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23 September 2017

1460-1468

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describes a project that uses

23 September 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC390299/fullTextXML

inferred from PubMed Central ID database lookup

cites work

Bilateral polycystic disease of the kidneys; a follow-up of two hundred and eighty-four patients and their families

1 reference

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The unexpected landscape of in vivo somatic mutation in a human epithelial cell lineage

24 September 2017

1 reference

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Survey of somatic mutations in tuberous sclerosis complex (TSC) hamartomas suggests different genetic mechanisms for pathogenesis of TSC lesions

24 September 2017

1 reference

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Homologues to the first gene for autosomal dominant polycystic kidney disease are pseudogenes

24 September 2017

1 reference

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A search for evidence of somatic mutations in the NF1 gene.

24 September 2017

1 reference

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Overcoming a barrier for DNA polymerization in triplex-forming sequences

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

DNA structural transitions within the PKD1 gene.

24 September 2017

1 reference

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Transcription through a simple DNA repeat blocks replication elongation

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

Mechanisms of triplex-caused polymerization arrest

24 September 2017

1 reference

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Loss of the polycystic kidney disease (PKD1) region of chromosome 16p13 in renal cyst cells supports a loss-of-function model for cyst pathogenesis

24 September 2017

1 reference

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Replication and mutagenesis of UV-damaged DNA templates in human and monkey cell extracts

24 September 2017

1 reference

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UV light-induced DNA synthesis arrest in HeLa cells is associated with changes in phosphorylation of human single-stranded DNA-binding protein

24 September 2017

1 reference

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PCR amplification of up to 35-kb DNA with high fidelity and high yield from lambda bacteriophage templates

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

Antiparallel, intramolecular triplex DNA stimulates homologous recombination in human cells

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

Simian virus 40 DNA replication in vitro

24 September 2017

1 reference

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Mutation and cancer: statistical study of retinoblastoma

24 September 2017

1 reference

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Fidelity of DNA synthesis in a mammalian in vitro replication system

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

Intramolecular DNA triplexes: unusual sequence requirements and influence on DNA polymerization

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

Lack of dependence on p53 for DNA double strand break repair of episomal vectors in human lymphoblasts

24 September 2017

1 reference

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Somatic deletions and mutations in the Cowden disease gene, PTEN, in sporadic thyroid tumors.

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

Loss of heterozygosity in the tuberous sclerosis (TSC2) region of chromosome band 16p13 occurs in sporadic as well as TSC-associated renal angiomyolipomas

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

Left-handed Z-DNA and intramolecular triplex formation at the site of an unequal sister chromatid exchange.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

Pulmonary lymphangioleiomyomatosis. Report of a case with associated multiple soft-tissue tumors

17 June 2018

1 reference

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Somatic mutation in individual liver cysts supports a two-hit model of cystogenesis in autosomal dominant polycystic kidney disease.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

A 2.5 kb polypyrimidine tract in the PKD1 gene contains at least 23 H-DNA-forming sequences.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

Gene conversion is a likely cause of mutation in PKD1.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

The molecular basis of focal cyst formation in human autosomal dominant polycystic kidney disease type I.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

The polycystic kidney disease 1 gene encodes a 14 kb transcript and lies within a duplicated region on chromosome 16. The European Polycystic Kidney Disease Consortium

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

Binding of RecA to anti-parallel poly(dA) · 2poly(dT) triple helix DNA

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=390299

Loss of heterozygosity in renal and hepatic epithelial cystic cells from ADPKD1 patients

4 November 2018

1 reference

12 December 2020

Is progression of renal involvement similar in twins with ADPKD? A multicentric European study

1 reference

12 December 2020

"Second hit" in sebaceous tumors from Muir-Torre patients with germline mutations in MSH2: allele loss is not the preferred mode of inactivation

1 reference

12 December 2020

A "two-hit" model of cystogenesis in autosomal dominant polycystic kidney disease?

1 reference

12 December 2020

Somatic mutations are frequent and increase with age in human kidney epithelial cells

1 reference

12 December 2020

Autosomal dominant polycystic kidney disease

1 reference

12 December 2020

Autosomal dominant polycystic kidney disease: a two-hit model

1 reference

12 December 2020

Loss of heterozygosity in polycystic kidney disease with a missense mutation in the repeated region of PKD1

1 reference

12 December 2020

Analysis of mutations induced by replication of UV-damaged plasmid DNA in HeLa cell extracts

1 reference

12 December 2020

Pkd1 unusual DNA conformations are recognized by nucleotide excision repair

1 reference

12 December 2020

The structure of intramolecular triplex DNA: atomic force microscopy study

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKH312

1 reference

23 September 2017

1 reference

23 September 2017

PubMed publication ID

14990751

1 reference