Specificity, free energy and information content in protein-DNA interactions (Q40859873)

24 September 2017

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title

Specificity, free energy and information content in protein-DNA interactions (English)

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24 September 2017

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Stormo GD

1

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PubMed ID

9581503

24 September 2017

Fields DS

series ordinal

2

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24 September 2017

1 March 1998

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24 September 2017

5

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Trends in Biochemical Sciences

inferred from page(s)

published in

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24 September 2017

23

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24 September 2017

3

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24 September 2017

109-113

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Transcription factors: structural families and principles of DNA recognition

24 September 2017

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The beta-ribbon DNA recognition motif

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Structure and function of DNA-binding proteins

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Quantitative analysis of electrophoresis data: novel curve fitting methodology and its application to the determination of a protein-DNA binding constant

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Solid phase technology improves coupled gel shift/footprinting analysis

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Physical basis of a protein-DNA recognition code

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Comprehensive analysis of hydrogen bonds in regulatory protein DNA-complexes: in search of common principles.

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A framework for the DNA-protein recognition code of the probe helix in transcription factors: the chemical and stereochemical rules

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Quantitative specificity of the Mnt repressor

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Consistencies of individual DNA base-amino acid interactions in structures and sequences

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Length-encoded multiplex binding site determination: application to zinc finger proteins

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Analysis of the sequence-specific interactions between Cro repressor and operator DNA by systematic base substitution experiments

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Lambda repressor recognizes the approximately 2-fold symmetric half-operator sequences asymmetrically

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In vitro evolution of the DNA binding sites of Escherichia coli methionine repressor, MetJ.

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Oligonucleotides as research, diagnostic, and therapeutic agents

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Biochemical and genetic analysis of operator contacts made by residues within the beta-sheet DNA binding motif of Mnt repressor

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Mapping sequence specific DNA-protein interactions: a versatile, quantitative method and its application to transcription factor XF1.

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Quantitative DNA sequencing to determine the relative protein-DNA binding constants to multiple DNA sequences

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Specificity of the Mnt protein determined by binding to randomized operators

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Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

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Selection of DNA binding sites by regulatory proteins. II. The binding specificity of cyclic AMP receptor protein to recognition sites

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Information content of binding sites on nucleotide sequences

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Escherichia colipromoter sequences predictin vitroRNA polymerase selectivity

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Mechanism and control of transcription initiation in prokaryotes

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Translation initiation in Escherichia coli: sequences within the ribosome-binding site

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10.1016/S0968-0004(98)01187-6

Identifiers

DOI

1 reference

24 September 2017

1 reference

PubMed ID

9581503