Sequencing-based detection of low-frequency human immunodeficiency virus type 1 drug-resistant mutants by an RNA/DNA heteroduplex generator-tracking assay (Q40909665)

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English	Sequencing-based detection of low-frequency human immunodeficiency virus type 1 drug-resistant mutants by an RNA/DNA heteroduplex generator-tracking assay	scientific article

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

Sequencing-based detection of low-frequency human immunodeficiency virus type 1 drug-resistant mutants by an RNA/DNA heteroduplex generator-tracking assay (English)

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

6

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

4

object named as

Soo-Yon Rhee

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

author name string

Amit Kapoor

1

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

Morris Jones

2

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

R W Shafer

3

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

Powel Kazanjian

5

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

language of work or name

0 references

publication date

1 July 2004

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Europe PubMed Central

PMC publication ID

24 September 2017

number of pages

12

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based on heuristic

inferred from page(s)

Journal of Virology

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Europe PubMed Central

PMC publication ID

24 September 2017

78

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

13

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

7112-7123

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

HIV sequence databases

1 reference

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24 September 2017

Turnover of env variable region 1 and 2 genotypes in subjects with late-stage human immunodeficiency virus type 1 infection

1 reference

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24 September 2017

Multiple viral genetic analyses detect low-level human immunodeficiency virus type 1 replication during effective highly active antiretroviral therapy

1 reference

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24 September 2017

Accuracy of the TRUGENE HIV-1 genotyping kit.

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24 September 2017

Rapid detection of rifampin resistance in Mycobacterium tuberculosis isolates by heteroduplex analysis and determination of rifamycin cross-resistance in rifampin-resistant isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=421662

24 September 2017

Mutagenically separated PCR assay for rapid detection of M41L and K70R zidovudine resistance mutations in CRF01_AE (subtype E) human immunodeficiency virus type 1.

1 reference

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24 September 2017

Identification of Epstein-Barr virus strain variants in hairy leukoplakia and peripheral blood by use of a heteroduplex tracking assay

1 reference

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24 September 2017

In vitro intersubtype recombinants of human immunodeficiency virus type 1: comparison to recent and circulating in vivo recombinant forms

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24 September 2017

Diversity considerations in HIV-1 vaccine selection

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24 September 2017

Origin of human immunodeficiency virus type 1 quasispecies emerging after antiretroviral treatment interruption in patients with therapeutic failure

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24 September 2017

Interference between D30N and L90M in selection and development of protease inhibitor-resistant human immunodeficiency virus type 1.

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24 September 2017

Population genetic analysis of the protease locus of human immunodeficiency virus type 1 quasispecies undergoing drug selection, using a denaturing gradient-heteroduplex tracking assay

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24 September 2017

Changes in human immunodeficiency virus type 1 populations after treatment interruption in patients failing antiretroviral therapy.

1 reference

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24 September 2017

Simultaneous detection of Mycobacterium leprae and its susceptibility to dapsone using DNA heteroduplex analysis

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24 September 2017

High degree of interlaboratory reproducibility of human immunodeficiency virus type 1 protease and reverse transcriptase sequencing of plasma samples from heavily treated patients

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24 September 2017

Route of simian immunodeficiency virus inoculation determines the complexity but not the identity of viral variant populations that infect rhesus macaques

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24 September 2017

Comparison of DNA sequencing and a line probe assay for detection of human immunodeficiency virus type 1 drug resistance mutations in patients failing highly active antiretroviral therapy

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24 September 2017

A multiple-site-specific heteroduplex tracking assay as a tool for the study of viral population dynamics

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24 September 2017

Viral genome characterisation by the heteroduplex mobility and heteroduplex tracking assays

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24 September 2017

A dual infection/competition assay shows a correlation between ex vivo human immunodeficiency virus type 1 fitness and disease progression

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24 September 2017

Human immunodeficiency virus type 1 mutations selected in patients failing efavirenz combination therapy

1 reference

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24 September 2017

Protease inhibitors: resistance, cross-resistance, fitness and the choice of initial and salvage therapies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=421662

24 September 2017

Comparison of sequencing by hybridization and cycle sequencing for genotyping of human immunodeficiency virus type 1 reverse transcriptase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=421662

24 September 2017

Limits of resistance testing

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24 September 2017

Search for the mechanism of genetic variation in the pro gene of human immunodeficiency virus.

1 reference

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24 September 2017

Worldwide evaluation of DNA sequencing approaches for identification of drug resistance mutations in the human immunodeficiency virus type 1 reverse transcriptase

1 reference

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24 September 2017

Stochastic processes strongly influence HIV-1 evolution during suboptimal protease-inhibitor therapy

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24 September 2017

Identification of new influenza B virus variants by multiplex reverse transcription-PCR and the heteroduplex mobility assay.

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24 September 2017

Rapid, transient changes at the env locus of plasma human immunodeficiency virus type 1 populations during the emergence of protease inhibitor resistance

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24 September 2017

Oligonucleotide ligation assay for detecting mutations in the human immunodeficiency virus type 1 pol gene that are associated with resistance to zidovudine, didanosine, and lamivudine.

1 reference

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24 September 2017

Evolutionary variants of the human immunodeficiency virus type 1 V3 region characterized by using a heteroduplex tracking assay

1 reference

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24 September 2017

Slower evolution of human immunodeficiency virus type 1 quasispecies during progression to AIDS

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24 September 2017

Genetic diversity of feline immunodeficiency virus: dual infection, recombination, and distinct evolutionary rates among envelope sequence clades

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24 September 2017

Characterization of simple and complex hepatitis C virus quasispecies by heteroduplex gel shift analysis: correlation with nucleotide sequencing

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24 September 2017

Line probe assay for rapid detection of drug-selected mutations in the human immunodeficiency virus type 1 reverse transcriptase gene

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24 September 2017

Genetic correlates of in vivo viral resistance to indinavir, a human immunodeficiency virus type 1 protease inhibitor

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24 September 2017

Interlaboratory comparison of sequence-specific PCR and ligase detection reaction to detect a human immunodeficiency virus type 1 drug resistance mutation. The AIDS Clinical Trials Group Virology Committee Drug Resistance Working Group

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24 September 2017

In vivo sequence diversity of the protease of human immunodeficiency virus type 1: presence of protease inhibitor-resistant variants in untreated subjects.

1 reference

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24 September 2017

Viral quasispecies.

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24 September 2017

Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays.

1 reference

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24 September 2017

Pol gene quasispecies of human immunodeficiency virus: mutations associated with drug resistance in virus from patients undergoing no drug therapy

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24 September 2017

Specific, sensitive, and rapid assay for human immunodeficiency virus type 1 pol mutations associated with resistance to zidovudine and didanosine.

1 reference

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24 September 2017

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24 September 2017

Detection of point mutations with a modified ligase chain reaction (Gap-LCR).

1 reference

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24 September 2017

Deletions of bases in one strand of duplex DNA, in contrast to single-base mismatches, produce highly kinked molecules: possible relevance to the folding of single-stranded nucleic acids

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24 September 2017

Detection of Mutations Associated with Zidovudine Resistance in Human Immunodeficiency Virus by Use of the Polymerase Chain Reaction

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24 September 2017

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17 June 2018

A microtitre format point mutation assay: application to the detection of drug resistance in human immunodeficiency virus type-1 infected patients treated with zidovudine

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17 June 2018

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19 August 2018

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19 August 2018

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19 August 2018

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19 August 2018

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19 August 2018

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19 August 2018

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19 August 2018

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19 August 2018

Genetic polymorphism near HIV-1 reverse transcriptase resistance-associated codons is a major obstacle for the line probe assay as an alternative method to sequence analysis.

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19 August 2018

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19 August 2018

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19 August 2018

Comparative performance of high-density oligonucleotide sequencing and dideoxynucleotide sequencing of HIV type 1 pol from clinical samples.

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19 August 2018

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19 August 2018

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19 August 2018

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19 August 2018

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19 August 2018

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2 December 2018

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2 December 2018

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HIV-1 resistance genotyping by sequencing produces inconsistent results for mixed viral populations

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https://pubmed.ncbi.nlm.nih.gov/15194787

12 December 2020

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Analysis of heterogeneous viral populations by direct DNA sequencing

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12 December 2020

based on heuristic

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Diagnosis of sickle-cell disease with a universal heteroduplex generator

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https://pubmed.ncbi.nlm.nih.gov/15194787

12 December 2020

based on heuristic

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Identification of drug-related genotypic changes in HIV-1 from serum using the selective polymerase chain reaction

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https://pubmed.ncbi.nlm.nih.gov/15194787

12 December 2020

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HIV Quasispecies and Resampling

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https://pubmed.ncbi.nlm.nih.gov/15194787

12 December 2020

based on heuristic

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Genetic screening and testing by induced heteroduplex formation

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https://pubmed.ncbi.nlm.nih.gov/15194787

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid detection of exon 1 NRAS gene mutations using universal heteroduplex generator technology

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https://pubmed.ncbi.nlm.nih.gov/15194787

12 December 2020

based on heuristic

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Rapid mutation screening in type 2A von Willebrand's disease using universal heteroduplex generators

1 reference

https://pubmed.ncbi.nlm.nih.gov/15194787

12 December 2020

based on heuristic

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North American and French caprine arthritis-encephalitis viruses emerge from ovine maedi-visna viruses

1 reference

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12 December 2020

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Evaluation of a polymerase chain reaction-based universal heteroduplex generator assay for direct detection of rifampin susceptibility of Mycobacterium tuberculosis from sputum specimens

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https://pubmed.ncbi.nlm.nih.gov/15194787

12 December 2020

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Identifiers

10.1128/JVI.78.13.7112-7123.2004

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

24 September 2017

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