Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells. (Q40912054)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

title

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

single cell transcriptomics

20 November 2019

main subject

transcriptome

0 references

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

Leonid Peshkin

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

1

Allon M Klein

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

5

Adrian Veres

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

author name string

Ilke Akartuna

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

Naren Tallapragada

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

Victor Li

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

David A Weitz

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

Marc W Kirschner

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

language of work or name

English

0 references

publication date

1 May 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

external data available at URL

20 November 2019

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE65525

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

volume

161

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

issue

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

page(s)

1187-1201

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

20 November 2019

cell culture

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

cites work

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24 September 2017

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24 September 2017

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24 September 2017

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PRDM14 ensures naive pluripotency through dual regulation of signaling and epigenetic pathways in mouse embryonic stem cells

24 September 2017

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24 September 2017

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Embryonic stem cell potency fluctuates with endogenous retrovirus activity

24 September 2017

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THAP11, a novel binding protein of PCBP1, negatively regulates CD44 alternative splicing and cell invasion in a human hepatoma cell line

24 September 2017

1 reference

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Microfluidic single cell analysis: from promise to practice

24 September 2017

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Droplet microfluidics for high-throughput biological assays

24 September 2017

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24 September 2017

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Gene expression heterogeneities in embryonic stem cell populations: origin and function

24 September 2017

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Extracting a cellular hierarchy from high-dimensional cytometry data with SPADE

24 September 2017

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24 September 2017

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24 September 2017

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Functional heterogeneity of embryonic stem cells revealed through translational amplification of an early endodermal transcript.

24 September 2017

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Metabolic oxidation regulates embryonic stem cell differentiation

24 September 2017

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24 September 2017

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24 September 2017

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Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal

24 September 2017

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The cyclic gene Hes1 contributes to diverse differentiation responses of embryonic stem cells

24 September 2017

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24 September 2017

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24 September 2017

1 reference

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Dependence of mouse embryonic stem cells on threonine catabolism

24 September 2017

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Regulated fluctuations in nanog expression mediate cell fate decisions in embryonic stem cells

24 September 2017

1 reference

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Ronin is essential for embryogenesis and the pluripotency of mouse embryonic stem cells

24 September 2017

1 reference

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Expression profiling in transgenic FVB/N embryonic stem cells overexpressing STAT3.

24 September 2017

1 reference

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Stochasticity and cell fate

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Identification and characterization of subpopulations in undifferentiated ES cell culture

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

24 September 2017

Droplet microfluidics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Nanog safeguards pluripotency and mediates germline development

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Cell cycle control of embryonic stem cells

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Design principle of gene expression used by human stem cells: implication for pluripotency

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Cdk6-cyclin D3 activity in murine ES cells is resistant to inhibition by p16(INK4a).

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Pluripotent cell division cycles are driven by ectopic Cdk2, cyclin A/E and E2F activities

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Intrinsic and extrinsic contributions to stochasticity in gene expression

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Random matrix approach to cross correlations in financial data

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Identification of genes periodically expressed in the human cell cycle and their expression in tumors

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Antisense RNA Amplification: A Linear Amplification Method for Analyzing the mRNA Population from Single Living Cells

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Disruption of the mouse RBP-J kappa gene results in early embryonic death

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

The interactomes of POU5F1 and SOX2 enhancers in human embryonic stem cells

24 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Accounting for technical noise in single-cell RNA-seq experiments.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Single-cell RNA-Seq profiling of human preimplantation embryos and embryonic stem cells

17 June 2018

1 reference

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Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Beating Poisson encapsulation statistics using close-packed ordering.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Fluorescence-activated droplet sorting (FADS): efficient microfluidic cell sorting based on enzymatic activity.

19 August 2018

1 reference

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Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Network neighborhood analysis with the multi-node topological overlap measure

19 August 2018

1 reference

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The External RNA Controls Consortium: a progress report.

19 August 2018

1 reference

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Refinement of gene expression patterns in the early Xenopus embryo

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Single-cell transcript analysis of pancreas development.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4441768

Progressive lineage analysis by cell sorting and culture identifies FLK1+VE-cadherin+ cells at a diverging point of endothelial and hemopoietic lineages

19 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26000487

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets

2 references

24 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1016/J.CELL.2015.05.002

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELL.2015.04.044

Models of stochastic gene expression

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELL.2015.04.044

DISTRIBUTION OF EIGENVALUES FOR SOME SETS OF RANDOM MATRICES

1 reference

24 May 2022

https://opencitations.net/index/coci/api/v1/references/10.1016/J.CELL.2015.04.044

Identifiers

DOI

10.1016/J.CELL.2015.04.044

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26000487%20AND%20SRC:MED&resulttype=core&format=json

20 November 2019

1 reference