Light-induced Changes in the Dimerization Interface of Bacteriophytochromes (Q40942309)

25 September 2017

Light-induced Changes in the Dimerization Interface of Bacteriophytochromes (English)

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25 September 2017

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11 June 2020

Janne Ihalainen

5

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11 June 2020

author name string

Alexander Björling

2

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11 June 2020

Marko Linna

3

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11 June 2020

Sebastian Westenhoff

4

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11 June 2020

language of work or name

English

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publication date

13 May 2015

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Journal of Biological Chemistry

25 September 2017

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11 June 2020

volume

290

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11 June 2020

issue

26

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11 June 2020

page(s)

16383-16392

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Phytochromes: an atomic perspective on photoactivation and signaling

11 June 2020

cites work

1 reference

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Benchmarking of optical dimerizer systems.

25 September 2017

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Origins of fluorescence in evolved bacteriophytochromes

25 September 2017

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An optimized optogenetic clustering tool for probing protein interaction and function

25 September 2017

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FTIR Spectroscopy Revealing Light-Dependent Refolding of the Conserved Tongue Region of Bacteriophytochrome

25 September 2017

1 reference

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Illuminating cell signalling with optogenetic tools

25 September 2017

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Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion

25 September 2017

1 reference

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Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome

25 September 2017

1 reference

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Signal amplification and transduction in phytochrome photosensors

25 September 2017

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Crystallographic snapshot of the Escherichia coli EnvZ histidine kinase in an active conformation

25 September 2017

1 reference

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Visualizing autophosphorylation in histidine kinases

25 September 2017

1 reference

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Segmental helical motions and dynamical asymmetry modulate histidine kinase autophosphorylation

25 September 2017

1 reference

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Structure of the Cyanobacterial Phytochrome 2 Photosensor Implies a Tryptophan Switch for Phytochrome Signaling

25 September 2017

1 reference

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Full-length structure of a sensor histidine kinase pinpoints coaxial coiled coils as signal transducers and modulators

25 September 2017

1 reference

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Mechanistic Insights Revealed by the Crystal Structure of a Histidine Kinase with Signal Transducer and Sensor Domains

25 September 2017

1 reference

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GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit

25 September 2017

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Dimerization properties of the RpBphP2 chromophore-binding domain crystallized by homologue-directed mutagenesis

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Structure of a bacteriophytochrome and light-stimulated protomer swapping with a gene repressor

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Structure-guided Engineering Enhances a Phytochrome-based Infrared Fluorescent Protein

25 September 2017

1 reference

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Probing pH-dependent dissociation of HdeA dimers

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Spectroscopy and a high-resolution crystal structure of Tyr263 mutants of cyanobacterial phytochrome Cph1

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Bacterial phytochromes: more than meets the light

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Spectroscopic and photochemical characterization of the red-light sensitive photosensory module of Cph2 from Synechocystis PCC 6803.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Quaternary organization of a phytochrome dimer as revealed by cryoelectron microscopy

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Structure of PAS-linked histidine kinase and the response regulator complex

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Structural insight into partner specificity and phosphoryl transfer in two-component signal transduction

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Conformational differences between the Pfr and Pr states in Pseudomonas aeruginosa bacteriophytochrome

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Tightening the knot in phytochrome by single-molecule atomic force microscopy

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Molecular dynamics simulations of the chromophore binding site of Deinococcus radiodurans bacteriophytochrome using new force field parameters for the phytochromobilin chromophore

25 September 2017

1 reference

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Crystal structure of Pseudomonas aeruginosa bacteriophytochrome: Photoconversion and signal transduction

25 September 2017

1 reference

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The structure of a complete phytochrome sensory module in the Pr ground state

25 September 2017

1 reference

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The PHY domain is required for conformational stability and spectral integrity of the bacteriophytochrome from Deinococcus radiodurans.

25 September 2017

1 reference

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Mutational analysis of Deinococcus radiodurans bacteriophytochrome reveals key amino acids necessary for the photochromicity and proton exchange cycle of phytochromes

25 September 2017

1 reference

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High resolution structure of Deinococcus bacteriophytochrome yields new insights into phytochrome architecture and evolution

25 September 2017

1 reference

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Canonical sampling through velocity rescaling

25 September 2017

1 reference

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Phytochrome structure and signaling mechanisms.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Structure of the entire cytoplasmic portion of a sensor histidine-kinase protein

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Phylogenetic analysis of the phytochrome superfamily reveals distinct microbial subfamilies of photoreceptors

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Light-induced conformational changes of cyanobacterial phytochrome Cph1 probed by limited proteolysis and autophosphorylation.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Heterodimerization of type II phytochromes in Arabidopsis

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Phytochrome photosensory signalling networks

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Structural and mutational analysis of the PhoQ histidine kinase catalytic domain. Insight into the reaction mechanism

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Protein identification and analysis tools in the ExPASy server

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Intermolecular complementation between two defective mutant signal-transducing receptors of Escherichia coli

25 September 2017

1 reference

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Small-angle X-ray scattering reveals the solution structure of a bacteriophytochrome in the catalytically active Pr state

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models.

15 June 2018

1 reference

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Connection between absorption properties and conformational changes in Deinococcus radiodurans phytochrome

19 August 2018

1 reference

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Unusual spectral properties of bacteriophytochrome Agp2 result from a deprotonation of the chromophore in the red-absorbing form Pr.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Fluorescence properties of the chromophore-binding domain of bacteriophytochrome from Deinococcus radiodurans.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Structure-guided engineering of plant phytochrome B with altered photochemistry and light signaling.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Obligate heterodimerization of Arabidopsis phytochromes C and E and interaction with the PIF3 basic helix-loop-helix transcription factor

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Spectral properties of phytochrome Agp2 from Agrobacterium tumefaciens are specifically modified by a compound of the cell extract

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Protein conformational changes of Agrobacterium phytochrome Agp1 during chromophore assembly and photoconversion

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

A light-sensing knot revealed by the structure of the chromophore-binding domain of phytochrome

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Light-dependent dimerisation in the N-terminal sensory module of cyanobacterial phytochrome 1.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Functional analysis of a 450-amino acid N-terminal fragment of phytochrome B in Arabidopsis.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Dimers of the N-terminal domain of phytochrome B are functional in the nucleus.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Two Small Spatially Distinct Regions of Phytochrome B Are Required for Efficient Signaling Rates

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

Fluorescence investigation of the recombinant cyanobacterial phytochrome (Cph1) and its C-terminally truncated monomeric species (Cph1Delta2): implication for holoprotein assembly, chromophore-apoprotein interaction and photochemistry.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4481235

PRIMUS: a Windows PC-based system for small-angle scattering data analysis

19 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M115.650127

Uptake of monoaromatic hydrocarbons during biodegradation by FadL channel-mediated lateral diffusion

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FJBC.M115.650127

21 January 2018

Identifiers

DOI

10.1074/JBC.M115.650127

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25971964%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25971964%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

PubMed publication ID

25971964

1 reference