ConPred II: a consensus prediction method for obtaining transmembrane topology models with high reliability. (Q41010655)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15215417%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

title

ConPred II: a consensus prediction method for obtaining transmembrane topology models with high reliability (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15215417%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

main subject

transmembrane protein

0 references

author

Masami IKEDA

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15215417%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

author name string

Masafumi Arai

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15215417%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

Hironori Mitsuke

2

1 reference

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30 December 2019

Jun-Xiong Xia

4

1 reference

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30 December 2019

Takashi Kikuchi

5

1 reference

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30 December 2019

Masanobu Satake

6

1 reference

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30 December 2019

Toshio Shimizu

7

1 reference

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30 December 2019

publication date

1 July 2004

1 reference

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30 December 2019

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15215417%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

volume

32

1 reference

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30 December 2019

issue

Web Server issue

1 reference

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30 December 2019

page(s)

W390-3

1 reference

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TMPDB: a database of experimentally-characterized transmembrane topologies

30 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

Transmembrane helix predictions revisited

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

The HMMTOP transmembrane topology prediction server

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

Evaluation of methods for the prediction of membrane spanning regions

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

SOSUI: classification and secondary structure prediction system for membrane proteins

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

A model recognition approach to the prediction of all-helical membrane protein structure and topology

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

TopPred II: an improved software for membrane protein structure predictions

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

Prediction of membrane protein topology utilizing multiple sequence alignments.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

The detection and classification of membrane-spanning proteins.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

ConPred_elite: a highly reliable approach to transmembrane topology predication

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

Identification of transmembrane protein functions by binary topology patterns

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441518

Transmembrane topology prediction methods: a re-assessment and improvement by a consensus method using a dataset of experimentally-characterized transmembrane topologies

19 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15215417

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The presence of signal peptide significantly affects transmembrane topology prediction

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15215417

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Comprehensive analysis of transmembrane topologies in prokaryotic genomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15215417

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKH380

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15215417%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/AraiMIXKSS04

30 December 2019

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15215417%20AND%20SRC:MED&resulttype=core&format=json

30 December 2019

PubMed publication ID

15215417

1 reference